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update prettier and editorconfig #46

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update prettier and editorconfig

update prettier and editorconfig #46

Re-run triggered February 8, 2024 15:56
@AlexVCaronAlexVCaron
c042e62
main
Status Failure
Total duration 14m 58s
Artifacts 2

test.yml

on: push
pytest-changes
7s
pytest-changes
prettier
14s
prettier
editorconfig
14s
editorconfig
pre-commit
34s
pre-commit
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
4s
confirm-pass
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42 errors and 32 warnings
nf-core-lint (subworkflows/load_test_data)
Process completed with exit code 1.
pytest (betcrop/fslbetcrop, docker)
Process completed with exit code 1.
pytest (betcrop/fslbetcrop, docker)
Process completed with exit code 1.
pytest (betcrop/cropvolume, docker)
Process completed with exit code 1.
pytest (betcrop/cropvolume, docker)
Process completed with exit code 1.
pytest (betcrop/fslbetcrop, singularity)
Process completed with exit code 1.
pytest (betcrop/fslbetcrop, singularity)
Process completed with exit code 1.
pytest (betcrop/cropvolume, singularity)
Process completed with exit code 1.
pytest (betcrop/cropvolume, singularity)
Process completed with exit code 1.
pytest (preproc/n4, docker)
Process completed with exit code 1.
pytest (preproc/n4, docker)
Process completed with exit code 1.
pytest (denoising/mppca, docker)
Process completed with exit code 1.
pytest (denoising/mppca, docker)
Process completed with exit code 1.
pytest (preproc/gibbs, docker)
Process completed with exit code 1.
pytest (preproc/gibbs, docker)
Process completed with exit code 1.
pytest (denoising/mppca, singularity)
Process completed with exit code 1.
pytest (denoising/mppca, singularity)
Process completed with exit code 1.
pytest (preproc/n4, singularity)
Process completed with exit code 1.
pytest (preproc/n4, singularity)
Process completed with exit code 1.
pytest (preproc/gibbs, singularity)
Process completed with exit code 1.
pytest (preproc/gibbs, singularity)
Process completed with exit code 1.
pytest (reconst/dtimetrics, docker)
Process completed with exit code 1.
pytest (reconst/dtimetrics, docker)
Process completed with exit code 1.
pytest (reconst/dtimetrics, singularity)
Process completed with exit code 1.
pytest (reconst/dtimetrics, singularity)
Process completed with exit code 1.
pytest (reconst/frf, docker)
Process completed with exit code 1.
pytest (reconst/frf, docker)
Process completed with exit code 1.
pytest (reconst/frf, singularity)
Process completed with exit code 1.
pytest (reconst/frf, singularity)
Process completed with exit code 1.
pytest (segmentation/fastseg, docker)
Process completed with exit code 1.
pytest (segmentation/fastseg, docker)
Process completed with exit code 1.
pytest (segmentation/freesurferseg, docker)
Process completed with exit code 1.
pytest (segmentation/freesurferseg, docker)
Process completed with exit code 1.
pytest (segmentation/freesurferseg, singularity)
Process completed with exit code 1.
pytest (segmentation/freesurferseg, singularity)
Process completed with exit code 1.
pytest (segmentation/fastseg, singularity)
Process completed with exit code 1.
pytest (segmentation/fastseg, singularity)
Process completed with exit code 1.
pytest (subworkflows/load_test_data, singularity)
Process completed with exit code 1.
pytest (subworkflows/load_test_data, singularity)
Process completed with exit code 1.
pytest (subworkflows/load_test_data, docker)
Process completed with exit code 1.
pytest (subworkflows/load_test_data, docker)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pre-commit
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-python@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (betcrop/cropvolume)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (betcrop/fslbetcrop)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (denoising/mppca)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (preproc/gibbs)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (preproc/n4)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (reconst/frf)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (segmentation/fastseg)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (reconst/dtimetrics)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (segmentation/freesurferseg)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (subworkflows/load_test_data)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (betcrop/fslbetcrop, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (betcrop/cropvolume, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (betcrop/fslbetcrop, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (betcrop/cropvolume, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (preproc/n4, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (denoising/mppca, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (preproc/gibbs, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (denoising/mppca, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (preproc/n4, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (preproc/gibbs, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (reconst/dtimetrics, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (reconst/dtimetrics, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (reconst/frf, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (reconst/frf, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (segmentation/fastseg, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (segmentation/freesurferseg, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (segmentation/freesurferseg, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (segmentation/fastseg, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (subworkflows/load_test_data, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (subworkflows/load_test_data, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
logs-docker- Expired
671 MB
logs-singularity- Expired
671 MB