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Fix fastsurfer option for T1 surface reconstruction + Add key QC steps in MultiQC report. #6
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…r atlas computation
…sing if freesurfer profile is run
12 tasks
gagnonanthony
changed the title
Fix fastsurfer option for T1 surface reconstruction
Fix fastsurfer option for T1 surface reconstruction + Add key QC steps in MutliQC report.
Dec 20, 2024
…if no fs license is provided
…etome child atlas
…se in infant profile
… output subfolder
gagnonanthony
changed the title
Fix fastsurfer option for T1 surface reconstruction + Add key QC steps in MutliQC report.
Fix fastsurfer option for T1 surface reconstruction + Add key QC steps in MultiQC report.
Jan 6, 2025
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The existing fastsurfer modules were missing the computation of a transform file required for atlas mapping. Also, I reduced the container size for atlases and added more tests.
Integrated QC screenshots to the MultiQC report per subject:
Added a population-level MultiQC report including quantitative assessment of processing quality:
#7
PR checklist
nf-core pipelines lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).