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#40 - Catch antsBrainExtraction.sh exit error code in stub-run + add stub test #68

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merged 5 commits into from
Dec 19, 2024

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gagnonanthony
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I added the trap function to catch the error code for antsBrainExtraction.sh. The function has to be placed after we fetch the versions and touch the files. If not, for some reason, it also catches the output files. Link to #40

@gagnonanthony gagnonanthony changed the title catch antsBrainExtraction.sh exit error code in stub-run + add stub test #40 - Catch antsBrainExtraction.sh exit error code in stub-run + add stub test Dec 12, 2024
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@ThoumyreStanislas ThoumyreStanislas left a comment

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LGTM! just one comment

modules/nf-neuro/betcrop/antsbet/tests/main.nf.test Outdated Show resolved Hide resolved
@arnaudbore arnaudbore added this pull request to the merge queue Dec 19, 2024
Merged via the queue into scilus:main with commit 81ec899 Dec 19, 2024
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@gagnonanthony gagnonanthony deleted the fixerrorcodes branch December 19, 2024 02:02
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4 participants