update snap and fix tests

scilus · Oct 24, 2024 · 0f69c3c · 0f69c3c
1 parent 87cd586
commit 0f69c3c
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Showing 3 changed files with 8 additions and 8 deletions.
diff --git a/.devcontainer/updateContentCommand.sh b/.devcontainer/updateContentCommand.sh
@@ -18,9 +18,9 @@ cat <<EOF > $XDG_CONFIG_HOME/nf-neuro/.env
 # It is sourced by the shell on startup of every terminals.
 
 export PROFILE=docker
-export NFCORE_MODULES_GIT_REMOTE=$GIT_REMOTE
+export NFCORE_MODULES_GIT_REMOTE="$GIT_REMOTE"
 export NFCORE_MODULES_BRANCH=$CURRENT_BRANCH
-export NFCORE_SUBWORKFLOWS_GIT_REMOTE=$GIT_REMOTE
+export NFCORE_SUBWORKFLOWS_GIT_REMOTE="$GIT_REMOTE"
 export NFCORE_SUBWORKFLOWS_BRANCH=$CURRENT_BRANCH
 
 export DEVCONTAINER_RAM_LIMIT_GB=$((maxmem / 1024 / 1024))

diff --git a/modules/nf-neuro/io/readbids/main.nf b/modules/nf-neuro/io/readbids/main.nf
@@ -19,7 +19,7 @@ process IO_READBIDS {
     script:
     def args = task.ext.args ?: ''
     def fs_folder = fs_folder ? "--fs $fs_folder" : ''
-    def bids_ignore = bidsignore ? "--bids_ignore $bids_ignore" : ''
+    def bids_ignore = bids_ignore ? "--bids_ignore $bids_ignore" : ''
     def readout = task.ext.readout ? "--readout " + task.ext.readout : ''
     def clean_flag = task.ext.clean_bids ? "--clean " : ''
 

diff --git a/modules/nf-neuro/io/readbids/tests/main.nf.test.snap b/modules/nf-neuro/io/readbids/tests/main.nf.test.snap
@@ -6,20 +6,20 @@
                     "tractoflow_bids_struct.json:md5,58e0494c51d30eb3494f7c9198986bb9"
                 ],
                 "1": [
-                    "versions.yml:md5,0af9864a1818468702fa7d6ac7985e29"
+                    "versions.yml:md5,53cf301d7d6076acbc0691d3e7e52437"
                 ],
                 "bidsstructure": [
                     "tractoflow_bids_struct.json:md5,58e0494c51d30eb3494f7c9198986bb9"
                 ],
                 "versions": [
-                    "versions.yml:md5,0af9864a1818468702fa7d6ac7985e29"
+                    "versions.yml:md5,53cf301d7d6076acbc0691d3e7e52437"
                 ]
             }
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-04-29T20:34:58.293363"
+        "timestamp": "2024-10-24T19:43:56.536400136"
     }
 }