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Original file line number | Diff line number | Diff line change |
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@@ -3,12 +3,12 @@ name: CI | |
on: [push, pull_request] | ||
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jobs: | ||
build: | ||
build-Linux: | ||
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runs-on: ubuntu-22.04 | ||
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steps: | ||
- uses: actions/checkout@v3 | ||
- uses: actions/checkout@v4.0.0 | ||
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- name: Install system dependencies | ||
run: > | ||
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@@ -26,6 +26,7 @@ jobs: | |
python-is-python3 | ||
python3-biopython | ||
python3-dev | ||
python3-setuptools | ||
python3-numpy | ||
python3-pil | ||
python3-pytest | ||
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@@ -49,3 +50,88 @@ jobs: | |
- name: Test | ||
run: | | ||
./install-prefix/bin/pymol -ckqy testing/testing.py --run all | ||
build-Windows: | ||
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runs-on: windows-latest | ||
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env: | ||
CONDA_ROOT: ${{github.workspace}}\..\tmp\mambaforge | ||
MAMBAFORGE_EXEC: ${{github.workspace}}\..\tmp\mambaforge.exe | ||
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steps: | ||
- uses: actions/[email protected] | ||
- name: Download miniconda | ||
shell: cmd | ||
run: |- | ||
if not exist %CONDA_ROOT% mkdir %CONDA_ROOT% | ||
curl -L -o %MAMBAFORGE_EXEC% https://github.com/conda-forge/miniforge/releases/download/24.3.0-0/Mambaforge-24.3.0-0-Windows-x86_64.exe | ||
start /wait %MAMBAFORGE_EXEC% /S /D=%CONDA_ROOT% | ||
- name: Set up Miniconda | ||
shell: cmd | ||
run: |- | ||
CALL %CONDA_ROOT%\\Scripts\\activate.bat | ||
conda install -y -c conda-forge -c schrodinger python cmake libpng freetype pyqt glew libxml2 numpy catch2=2.13.3 glm libnetcdf collada2gltf biopython pillow msgpack-python pytest | ||
- name: Conda info | ||
shell: cmd | ||
run: |- | ||
CALL %CONDA_ROOT%\\Scripts\\activate.bat | ||
conda info | ||
- name: Get additional sources | ||
shell: cmd | ||
run: | | ||
git clone --depth 1 https://github.com/rcsb/mmtf-cpp.git | ||
cp -R mmtf-cpp/include/mmtf* %CONDA_ROOT%/Library/include/ | ||
git clone --depth 1 --single-branch --branch cpp_master https://github.com/msgpack/msgpack-c.git | ||
cp -R msgpack-c/include/msgpack* %CONDA_ROOT%/Library/include/ | ||
- name: Build PyMOL | ||
shell: cmd | ||
run: | | ||
CALL %CONDA_ROOT%\\Scripts\\activate.bat | ||
python setup.py --testing install --prefix=%GITHUB_WORKSPACE%\\install-prefix | ||
- name: Test | ||
shell: cmd | ||
run: | | ||
CALL %CONDA_ROOT%\\Scripts\\activate.bat | ||
%GITHUB_WORKSPACE%\\install-prefix\\Scripts\\pymol.bat -ckqy testing\\testing.py --run all | ||
build-MacOS: | ||
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runs-on: macos-latest | ||
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env: | ||
CONDA_ROOT: "/tmp/miniconda" | ||
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steps: | ||
- uses: actions/[email protected] | ||
- name: Set up Miniconda and Build | ||
run: |- | ||
curl -L -o $CONDA_ROOT.sh https://github.com/conda-forge/miniforge/releases/download/24.3.0-0/Mambaforge-MacOSX-x86_64.sh | ||
bash $CONDA_ROOT.sh -b -p $CONDA_ROOT | ||
export PATH="$CONDA_ROOT/bin:$PATH" | ||
conda config --set quiet yes | ||
conda install -y -c conda-forge -c schrodinger python cmake libpng freetype pyqt glew libxml2 numpy catch2=2.13.3 glm libnetcdf collada2gltf biopython pillow msgpack-python pytest | ||
conda info | ||
- name: Get additional sources | ||
run: | | ||
git clone --depth 1 https://github.com/rcsb/mmtf-cpp.git | ||
cp -R mmtf-cpp/include/mmtf* ${CONDA_ROOT}/include/ | ||
git clone --depth 1 --single-branch --branch cpp_master https://github.com/msgpack/msgpack-c.git | ||
cp -R msgpack-c/include/msgpack* ${CONDA_ROOT}/include/ | ||
- name: Build PyMOL | ||
run: |- | ||
export MACOSX_DEPLOYMENT_TARGET=12.0 | ||
export PATH="$CONDA_ROOT/bin:$PATH" | ||
python setup.py install --prefix=${GITHUB_WORKSPACE}/install-prefix | ||
- name: Test | ||
run: |- | ||
export PATH="$CONDA_ROOT/bin:$PATH" | ||
${GITHUB_WORKSPACE}/install-prefix/bin/pymol -ckqy testing/testing.py --run all |
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