Added options in support for both standalone and coupled compilations…

… (e.g. ufs-coastal) (#138)

* updated the PaHM sourcesto their latest version as of 07/19/2022

* fixed bug in CPP projection subroutines so the argument of cos is in radians

* modified the cmake files for ParMETIS to allow the use of externally built ParMETIS libraries if requested

* added the NO_PARMETIS capability to the src/CMakeLists.txt src/Driver/CMakeLists.txt files

* typo fix in the FindParMETIS.cmake file

* Add a deleted cmake def (IMPOSE_NET_FLUX)

* fix read format issue in ReadCsvBestTrackFile subroutine when reading b-deck formatted track files

* fixed CMakeLists.txt

* deleted duplicated fortran statement in parwind.F90

* PAHM: fixed CSV read issue with columns 7 and 8 in the best track files

* temp commit

* another temp commit

* Added new code in PaHM to account for missing of last closed isobar radius (RRP).
The fields are usually missing in forecast track files and occassionaly in best track files.

* added '-mcmodel medium' compiler flag to overcome the 2GB memory limit (orion/hercules)

* removed the AVX flag for orion/hercules compilations

* added options in the cmake module files for orion/hercules to consider compilations w/wo Intel's AVX

* Modified the src/CMakeLists.txt in support of standalone and coupled compilations; added the BUILD_TOOLS option to also build the pschism* and the utilities executables in coupled configurations (e.g ufs-coastal)

* modified slightly the if(BLD_STANDALONE) ... else(BLD_STANDALONE)... conditional block

* reverted changes in cmake/*

---------

Co-authored-by: Joseph Zhang <[email protected]>

src/CMakeLists.txt

@@ -75,6 +75,7 @@ define_opt(USE_AGE "Enable age tracer module" OFF)
 define_opt(ICM_PH "Enable pH module in ICM" OFF)
 define_opt(USE_DVD "Enable DVD module" OFF)
 define_opt(BLD_STANDALONE "Standalone build mode" ON)
+define_opt(BUILD_TOOLS "Build pschism and all the utilities" ON)
 
 if(NOT DEFINED TVD_LIM)
   message(WARNING "TVD_LIM must be provided, either in the cache. It must be one of SB, VL, MM or OS for Superbee, Van Leer, Minmod, or Osher. Default is VL")
@@ -172,17 +173,25 @@ endif()
 
 ########### Put each type of output (exe, libraries, modules) in the normal places
 ###         This file is untested for compilers with no output module directory option
+message(STATUS "\n### Assigning output directories for binaries (bin), modules (include) and libraries (lib)")
 if (BLD_STANDALONE)
-  message(STATUS "\n### Assigning output directories for binaries (bin), modules (include) and libraries (lib)")
-  set ( CMAKE_RUNTIME_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/bin
-    CACHE PATH "Output Directory for executables.")
-
-  set ( CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib
-    CACHE PATH "Output Directory for all static libraries.")
-
-  set ( CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib
-    CACHE PATH "Output Directory for all shared libraries.")
+  set ( CMAKE_RUNTIME_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/bin)
+#  set ( CMAKE_RUNTIME_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/bin
+#    CACHE PATH "Output Directory for executables.")
+
+  set ( CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
+#  set ( CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib
+#    CACHE PATH "Output Directory for all static libraries.")
+
+  set ( CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
+#  set ( CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib
+#    CACHE PATH "Output Directory for all shared libraries.")
+else()
+  set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin)
+  set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib)
+  set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib)
 endif()
+
 if( CMAKE_Fortran_MODDIR_FLAG)
   SET( CMAKE_Fortran_MODULE_DIRECTORY ${PROJECT_BINARY_DIR}/include
   CACHE PATH "Output location for include files and fortran modules")
@@ -351,14 +360,14 @@ set_property( DIRECTORY ${moddir} APPEND PROPERTY COMPILE_DEFINITIONS ${all_defi
 endforeach()
 
 # Set the driver information for BLD_STANDALONE
-if (BLD_STANDALONE)
+if (BLD_STANDALONE OR BUILD_TOOLS)
   message(STATUS "\n### Configuring Driver")
   add_subdirectory( Driver )
   set_property( DIRECTORY "Driver" APPEND PROPERTY COMPILE_DEFINITIONS ${all_define_options} ${all_use_mod_defs})
 endif()
 
 ######## Utilities ########
-if (BLD_STANDALONE)
+if (BLD_STANDALONE OR BUILD_TOOLS)
 message(STATUS "\n### Configuring Utilities")
 add_subdirectory( Utility )
 endif()