epimeter is a tool that determines how similar a given neo-epitope is to the human proteome by calculating the distance between the peptide sequences. epimeter has two functions: "index" which indexes kmers in a protein FASTA file into an Annoy Index and "query" which allows the user to search for a specific neo-epitope candidate within the Annoy Index.
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epimeter is a tool that determines how similar a given neo-epitope is to the human proteome by calculating the distance between the peptide sequences. epimeter has two functions: "index" and "query." The "index" function takes a FASTA file of proteins as an input and indexes all of the protein k-mers (user specifies k) into an Annoy Index. The "…
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epimeter is a tool that determines how similar a given neo-epitope is to the human proteome by calculating the distance between the peptide sequences. epimeter has two functions: "index" and "query." The "index" function takes a FASTA file of proteins as an input and indexes all of the protein k-mers (user specifies k) into an Annoy Index. The "…
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