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DLBPointon merged 61 commits intodevsanger-tol/ear:devfrom mainsanger-tol/ear:mainCopy head branch name to clipboardOct 8, 2024

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Commits

Commits on Aug 5, 2024

• Last weeks addition

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• Last weeks addition

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Commits on Aug 7, 2024

• Adding 2 pipeline nesting method for btk

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• Updates to add BTK

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Commits on Aug 8, 2024

• Updates and additions

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• Updates and additions

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Commits on Aug 9, 2024

• Updates to complete skeleton of pipeline

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Commits on Aug 19, 2024

• Updating nesting and fixing stuff

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• adding merqury_fk

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Commits on Aug 21, 2024

• Updating documentation

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• Updating documentation

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• Module config update

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• Updating subworkflows

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• Updating the main workflow file

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• Update to sample yaml and files

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• Merge pull request #1 from sanger-tol/dp24_refactoring

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• testing

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• Updating the tests

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• Updating the tests

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• upping version of nextflow, due to errors on Actions

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• Multi-hap support

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Commits on Sep 2, 2024

• Corrected GFASTATS error caused by a faulty flag

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• Uncomment workflow

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Commits on Sep 12, 2024

• Update ci.yml

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Commits on Sep 18, 2024

• Updating the CICD and adding steps

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• Merge branch 'dp24_testdata' of https://github.com/sanger-tol/ear into dp24_testdata

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• Extra }

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• Fix steps

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• Wrong Pacbio path

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• Wrong Pacbio path

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• Correct collision

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• Update for linting

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• PRETTIER

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• Template yaml PRETTIER fix

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• Merge pull request #2 from sanger-tol/dp24_testdata

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• Updates

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• Testing addition of ncbidatasets summary module

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• not touching ncbi datasets cli

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• Merge pull request #5 from sanger-tol/dp24_ncbids

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Commits on Sep 19, 2024

• Bug Fix for extra comma in btk module

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• Merge pull request #6 from sanger-tol/dp24_bug_fix

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Commits on Sep 20, 2024

• Adding MINIMAP2 resource fix

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• Updating documentation

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• Fix LICENSE lint

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• Merge pull request #7 from sanger-tol/dp24_bug_fix

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• Update CHANGELOG.md

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• Update nextflow.config

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Commits on Oct 1, 2024

• Update README.md

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• Update nextflow.config

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Commits on Oct 8, 2024

• Merge pull request #9 from sanger-tol/DLBPointon-patch-1-1

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• Update modules.config

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• Update CHANGELOG.md

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• Update nextflow.config

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• Update CHANGELOG.md

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• Merge branch 'DLBPointon-patch-1' of https://github.com/sanger-tol/ear into DLBPointon-patch-1

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• updating version info and fixing linting error

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• Prettier

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• New line for editorconfig

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• Merge pull request #10 from sanger-tol/DLBPointon-patch-1

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