PretextView 1.0.0

What's Changed

Features added:

• Automatic curation: YaHS algorithm sorting of contigs, globally or locally within selected area

• UserProfile function: background color, color map, meta tag style, extension graph style

• Input sequence search and adaptive zoom locating

• Jump to diagonal after fragment selection whilst in edit mode

• Change to waypoints - vertical, horizontal, cross

• Embedded extension track toggle menu (x)

• Top level extension track toggle for "coverage" and "gap"

• Updated Metadata tags list

• Metadata tags sorting function

• Map cache clear function

• Compile script is changed from meson to CMake

• Icon updates to new version v1.0.0

New Contributors

• @guanshaoheng
• @atharvfakatkar

Full Changelog: 0.2.5...1.0.0

PretextView 0.2.5

0.2.5 full release

Full Changelog: 0.2.4...0.2.5

PretextView 0.2.5 devel release 2

0.2.5 development release version 2. Shouldn't be considered production ready.

New features:

• Option to preserve sequence order in AGP output.
• Option to display embedded graph labels.

Note: Save-states only compatible with previous version (0.2.5-dev-1).

Full Changelog: 0.2.4...0.2.5-dev-2

PretextView 0.2.5 devel release 1

0.2.5 development release version 1. Shouldn't be considered production ready.

New features:

• More default tags
• Painted sequences auto-tagged in AGP output
• Higher resolution support (experimental)

Note: Save-states not compatible with previous version.

PretextView 0.2.5 devel release 0

0.2.5 development release version 0. Shouldn't be considered production ready.

New features:

• More scaffold painting options.
• Meta data tags to map sequences.
• Scaffold lookup menu.

Improvements:

• More accurate position info on tooltip.

Note: Save-states not compatible with previous version.

PretextView 0.2.4

Bug fix (from 0.2.3) -> Program would crash displaying any embedded graphs at the end of a map.

PretextView 0.2.3

Bug fix -> Scaffold painting small sequences at edges of map.

New feature -> In AGP output, added the option 'Format Singletons', which preserves singleton orientations in AGP output. This is non-standard AGP format, so should be used with caution.

PretextView 0.2.2

Bug fix, program would sometimes get stuck in an infinite loop loading waypoint data from save-states

PretextView 0.2.1

Bug fix. Fixes memory overflow bug when opening maps with very high number of sequences.

PretextView 0.2.0

Full release of v0.2.0