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ArborX neighbor search#250

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kuberry wants to merge 40 commits intomastersandialabs/compadre:masterfrom arborx_neighbor_search_floatsandialabs/compadre:arborx_neighbor_search_floatCopy head branch name to clipboard

+36,304-20,210

Commits

Commits on Sep 30, 2021

• Switch compressed row radius neighbor search to use ArborX

  kuberry

  committed
  a475a16

• Add ArborX to arborx folder at SHA 3ff6ce508f0fee7

  kuberry

  committed
  9d6bb95

• Update Kokkos to tag 3.1.00

  kuberry

  committed
  44766f8

• Add conversion from neighbor list accessor to 2D array

  kuberry

  committed
  d809fde

• Two phase radius neighbor search completed for 2D array fill

  kuberry

  committed
  6ce7bde

• Switch to AccessTraits for ArborX BVH initialization

  kuberry

  committed
  a4b47b6

• Switch to AccessTraits for ArborX query

  kuberry

  committed
  41df68a

• Clean up unused variables and assertions

  kuberry

  committed
  5315407

• Changed spaces to host so that neighbor search works on host with GPU

  kuberry

  committed
  7c44d2c

• Switched KNN search over to ArborX

  kuberry

  committed
  7a4a5f9

• Add check_same option to neighbor search

  Show description for 84582c9
  kuberry

  committed
  84582c9

• Added Compadre_USE_ARBORX option to CMake

  Show description for 4f24ba2
  kuberry

  committed
  4f24ba2

• Fix bug in checking neighbors are same between dry-run and real search

  kuberry

  committed
  57b5ae4

• Add debugging statement to neighbor search to expose that ArborX uses floats

  kuberry

  committed
  9da2880

• Prune unneeded ArborX files/directories

  kuberry

  committed
  1c87603

• ArborX radius search working on GPU

  kuberry

  committed
  e15e217

• ArborX nearest neighbor search working on GPU

  kuberry

  committed
  db935f8

Commits on Oct 1, 2021

• Added search_scalar type and SEARCH_SCALAR_EPS, modify neighbor test for floats

  Show description for 0bc39fe
  kuberry

  committed
  0bc39fe

• Move arborx to src/tpl folder

  kuberry

  committed
  61a1a1f

• Update CMake logic for arborx source files move

  kuberry

  committed
  7382af1

• Remove unneeded arborx files

  kuberry

  committed
  1649ae4

• Prune more arborx files

  kuberry

  committed
  027dd6e

• Prune even more arborx files

  kuberry

  committed
  20ddfb3

• Update search using ArborX to reflect neighbors included with distance==radius

  kuberry

  committed
  f42ed1c

• Remove need for dry run for ArborX searches

  kuberry

  committed
  cd38160

• Remove all dry-run followed by real-run neighbor search in examples (changes API)

  Show description for f8daa0c
  kuberry

  committed
  f8daa0c

• Converted Nanoflann search to recursively call itself

  Show description for 8517bfb
  kuberry

  committed
  8517bfb

• Remove dry-run parameter from KNN searches (ArborX and Nanoflann)

  Show description for c623f05
  kuberry

  committed
  c623f05

• Made rank 2 layout searches for ArborX and Nanoflann common

  Show description for 5abad79
  kuberry

  committed
  5abad79

Commits on Oct 2, 2021

• Use Andrey's update for sorting on CPU

  kuberry

  committed
  d1c57c5

Commits on Oct 4, 2021

• Everything inside of PointCloudSearch now performed on device for ArborX

  kuberry

  committed
  e5ef340

• Make resizes conditional on size check for ArborX

  kuberry

  committed
  2b66847

• Remove unneeded fences following deep_copy

  kuberry

  committed
  46191bd

• Explicitly add ArborX to Compadre_EXT_DEPS list and set PREFIX

  kuberry

  committed
  f4c9a3a

Commits on Oct 5, 2021

• Set CMAKE_BUILD_TYPE to "" to avoid default of ReleaseWithDebInfo from ArborX

  kuberry

  committed
  6927e7e

• Refactored quadrature choice to avoid compiler warnings

  kuberry

  committed
  c094150

Commits on Oct 28, 2021

• Add default constructor to Points struct

  Show description for 034fcb1
  kuberry

  committed
  034fcb1

Commits on Oct 31, 2021

• Change KOKKOS_LAMBDAs on host to [&]

  kuberry

  committed
  4553d7a

Commits on Nov 1, 2021

• Remove several unneeded deep_copy's in PointCloudSearch_ArborX

  kuberry

  committed
  c421afe

• Fix Kokkos:Serial copy typo

  kuberry

  committed
  ee0cf02