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New mpileup2 draft (intended for discussions, not ready to merge!) #1842

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New mpileup2 draft (intended for discussions, not ready to merge!) #1842

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Commits on Oct 7, 2022

  1. Backup commit only, nothing is working, long way to go

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    pd3 committed Oct 7, 2022
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Commits on Nov 23, 2022

  1. Merge from develop, resolve conflicts

    @pd3
    pd3 committed Nov 23, 2022
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  2. Merge branch 'develop' into mpileup2

    @pd3
    pd3 committed Nov 23, 2022
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  3. Backup commit. Compiles but not functional

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    pd3 committed Nov 23, 2022
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Commits on Nov 24, 2022

  1. Backup commit. Compiles but not functional

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    pd3 committed Nov 24, 2022
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Commits on Nov 25, 2022

  1. Merge branch 'mpileup2' of github.com:samtools/bcftools into mpileup2

    @pd3
    pd3 committed Nov 25, 2022
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  2. Merge branch 'develop' into mpileup2

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    pd3 committed Nov 25, 2022
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Commits on Dec 22, 2022

  1. Backup commit 

    - replaced mpileup_set_opt macro with mpileup_set stdarg function
- compiles
- prints a simple pileup on the screen
    @pd3
    pd3 committed Dec 22, 2022
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Commits on Jan 16, 2023

  1. Merge branch 'develop' into mpileup2

    @pd3
    pd3 committed Jan 16, 2023
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Commits on Jun 26, 2023

  1. backup commit: finish regions vgr $bt mpileup2 -f test/mpileup/mpileu… 

    …p.ref.fa test/mpileup/mpileup.1.bam test/mpileup/mpileup.2.bam -o /dev/null -r 17:10,17:16 2>&1 | less
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    pd3 committed Jun 26, 2023
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Commits on Jul 11, 2023

  1. backup commit

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    pd3 committed Jul 11, 2023
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