Github release

.circleci/config.yml

@@ -17,6 +17,6 @@ jobs:
       - run: mvn -B install -Psamply
 
       - setup_remote_docker
-      - run: docker build -t martinbreu/samply-connector:latest .
+      - run: docker build -t martinbreu/samply-connector:${CIRCLE_SHA1} .
       - run: docker login -u martinbreu -p "${DOCKER_HUB_PASSWD}"
-      - run: docker push martinbreu/samply-connector:latest
+      - run: docker push martinbreu/samply-connector:${CIRCLE_SHA1}

.github/ISSUE_TEMPLATE.md

@@ -0,0 +1,29 @@
+**Describe your problem.**
+
+A clear and concise description of what the problem is.
+
+
+**If it is a bug name steps to reproduce**
+
+Steps to reproduce the behavior:
+1. Go to '...'
+2. Click on '....'
+3. Scroll down to '....'
+4. See error
+
+
+**If it is a bug complete the following information:**
+
+ - Version: [e.g. 1.2.3]
+ - OS: [e.g. Windows, Linux, OS X]
+ - Browser: [e.g. chrome, firefox, safari]
+
+
+**Describe the solution you'd like**
+
+A clear and concise description of what you want to happen.
+
+
+**Additional context**
+
+Add any other context or screenshots about the feature request here.

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,5 @@
+**What's in the PR**
+* ...
+
+**How to test manually**
+* ...

.github/workflows/ci.yml

@@ -0,0 +1,32 @@
+# This workflow will build a Java project with Maven
+# For more information see: https://help.github.com/actions/language-and-framework-guides/building-and-testing-java-with-maven
+
+name: Java CI with Maven
+
+on: [ push, pull_request ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    services:
+      postgres:
+        image: postgres
+        env:
+          POSTGRES_DB: samply.connector
+          POSTGRES_PASSWORD: samply
+          POSTGRES_USER: samply
+          POSTGRES_HOST: localhost
+        ports:
+          - 5432:5432
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Setup Java
+        uses: actions/setup-java@v1
+        with:
+          java-version: 8
+
+      - name: Build with Maven
+        run: mvn -B package -P samply

CHANGELOG.md

@@ -4,6 +4,16 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](http://keepachangelog.com/)
 and this project adheres to [Semantic Versioning](http://semver.org/).
 
+## [7.0.0 - 2020-11-27]
+- Github release
+### Changed
+- Samply parent 11.1.0
+## Added
+- Github Actions
+- Google Code Style
+### Bugfix
+- fixed functional tests for BLAZE
+
 ## [6.13.0 - 2020-10-14]
 ### Changed
 - changed locale default from de to en

GETTINGSTARTED.md

@@ -0,0 +1,95 @@
+# Getting started
+
+## Cloning the repository
+
+Choose or create a directory for the repository to get cloned into, such as your Desktop. This is the directory we'll be working out of, so pick somewhere convenient.
+
+Using a CLI, run the following command in the directory: `git clone  https://github.com/samply/share-client.git`
+
+Once the command has finished executing, you should have a copy of this repository named `share-client` inside your project directory.
+
+## Setting up the environment
+
+### Requirements
+
+You will need [Intelj IDEA](https://www.jetbrains.com/idea/) (the community edition is freely available for download) and [Java SDK](https://www.oracle.com/java/technologies/javase-downloads.html) to build the project, aswell as [Maven](https://maven.apache.org/).
+
+## Working in this repository
+
+From now on, whenever you want to make a change in the repository, you will first need to branch off the master branch. Using a CLI in the `share-client` directory, first check if the master branch is fully up to date:
+
+```
+git checkout master
+git fetch
+git pull
+```
+
+Now you can create a new branch. Please use the `feature-` prefix so that it's clear that your branch is a temporary, in-progress development branch. Creating your branch can be done using one of two methods:
+
+### CLI
+
+Simply enter `git checkout -b feature-somenamehere` to have a branch created for you.
+
+### GitHub for Desktop
+
+In the application, go to ``Branch -> New branch...``. Give this an appropriate name (don't forget the prefix) and ensure that the branch is based on the `master` branch.
+
+
+### Test your changes
+After you are done with your changes, you need to test it locally before you create a new pull request.
+This can be done using [Tomcat](#tomcat) or [Docker](#docker).
+
+#### Tomcat
+If you do not have [Tomcat](http://tomcat.apache.org/) please install the newest version of it.
+Then do the following steps:
+* Add Tomcat to the "Run/Debug Configurations" of Intellij
+* In the "Server" tab you can choose the port of Tomcat (default 8080)
+* Go to the "Deployment" tab and add the "share-client:war" artifact
+
+#### Postgres
+You also need [Postgres](https://www.postgresql.org/download/) for the manual version of deploying.
+The connector uses jooq and flyway to create the database.
+
+Depends on which maven profile you use, the configuration for the postgres can change.
+In the [pom.xml](https://github.com/samply/share-client/blob/master/pom.xml) you can see the configurations for each profile.
+Please create the user and the database in postgres according to the selected profile.
+After you created the database run in Intellij the command `mvn flyway:clean flyway:migrate jooq-codegen:generate` to initialise the empty database.
+
+After the configuration of Tomcat and Postgres run the maven command `mvn clean install` and run Tomcat in Intellij to deploy and run the connector with your changes.
+
+#### Docker (Only works with Maven profile "samply")
+If you want to use [Docker](https://www.docker.com/) for testing your changes you can do it by running the following commands.
+* `mvn clean install` to create a WAR-file for the Docker image
+* Run at the directory of the share-client project the following script to deploy a Postgres container and then a connector container:
+
+
+        
+    docker rm pg-connector
+
+    docker run \
+        --name pg-connector \
+        -e POSTGRES_USER=samply \
+        -e POSTGRES_DB=samply.connector \
+        -e POSTGRES_PASSWORD=samply \
+        -p 5432:5432 \
+    postgres:9.6
+
+    docker rm connector
+
+    docker build . -t connector:latest
+
+    docker run \
+        --name=connector \
+        -p 8082:8080 \
+        -e POSTGRES_HOST='pg-connector' \
+        -e POSTGRES_DB='samply.connector' \
+        -e POSTGRES_USER='samply' \
+        -e POSTGRES_PASS='samply' \
+        -e MDR_URL='https://mdr.germanbiobanknode.de/v3/api/mdr' \
+        -e STORE_URL='http://store:8080' \
+        -e QUERY_LANGUAGE='CQL' \
+        -e CATALINA_OPTS='"-Xmx2g"' \
+    connector
+
+### Pull Request
+After you tested your changes you can create on Github a new pull request. Please merge new feature branches only into develop. 

LICENSE

@@ -0,0 +1,201 @@
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+
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