build #264
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| name: build | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: "55 14 * * 5" # Run at a random time weekly | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.12"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Setup conda and dependencies | |
| run: | | |
| git clone --depth 5 https://github.com/salilab/rmf.git ~/rmf | |
| tools/setup_ci.sh ${{ matrix.python-version }} | |
| - name: Test | |
| run: | | |
| eval "$(conda shell.bash hook)" | |
| conda activate python${{ matrix.python-version }} | |
| rm -f ${CONDA_PREFIX}/lib/libimp_npctransport.so* ${CONDA_PREFIX}/lib/_IMP_npctransport.so | |
| # Use same C/C++ compiler as conda | |
| source ${CONDA_PREFIX}/etc/conda/activate.d/activate-gcc_linux-64.sh | |
| source ${CONDA_PREFIX}/etc/conda/activate.d/activate-gxx_linux-64.sh | |
| mkdir build && cd build | |
| cmake .. -DCMAKE_BUILD_TYPE=Release -DIMP_DIR=${CONDA_PREFIX}/lib/cmake/IMP -DCMAKE_CXX_FLAGS="-fprofile-arcs -ftest-coverage" -DAVROCPP_INCLUDE_PATH=~/rmf/src/avrocpp/api | |
| make | |
| ./setup_environment.sh pytest --cov=.. --cov-branch --cov-report=xml -v -k 'not test_protobuf_installed and not add_test_sites' ../test/test_*.py ../test/medium_test_*.py test/*/*.py | |
| flake8 ../pyext/src/ | |
| - uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |