IMP spatiotemporal tutorial

NOTE: This tutorial is still in progress of being completed. Please do not use yet. In the meantime, see https://github.com/salilab/imp/tree/develop/modules/spatiotemporal/examples/toy for a worked demonstration of the spatiotemporal module

Tutorial for computing spatiotemporal integrative models in IMP. For more information please check out the related publications:

• Latham bioRxiv, 2024, https://doi.org/10.1101/2024.08.06.606842.
• Rožič et al. in preparation. (tutorial paper)

This tutorial explores scripts that:

• Generates snapshot models at various timepoints along a dynamic process
• Connects models at neighboring time points to produce a set of trajectory models of the process of interest
• Score and assess these trajectory models to evaluate their accuracy and precision

Running the Tutorial

See the IMP website for the tutorial text. A worked example (modeling) and an empty example with the necessary scripts and data for the user to run (modeling_empty) are provided. Finally, please note that the tutorial is based on synthetically generated data, and is not meant to be indicative of the true assembly process of this protein complex.