Merge branch 'develop' into oriented_matroids

.ci/retrofit-worktree.sh

@@ -43,4 +43,4 @@ git worktree add --detach $WORKTREE_NAME
 rm -rf $WORKTREE_DIRECTORY/.git && mv $WORKTREE_NAME/.git $WORKTREE_DIRECTORY/
 rm -rf $WORKTREE_NAME && ln -s $WORKTREE_DIRECTORY $WORKTREE_NAME
 if [ ! -f $WORKTREE_NAME/.gitignore ]; then cp .gitignore $WORKTREE_NAME/; fi
-(cd $WORKTREE_NAME && git add -A && git commit --quiet --allow-empty -m "old" -a && git tag -f old && git checkout new && git status)
+(cd $WORKTREE_NAME && git add -A && git commit --quiet --allow-empty -m "old" -a && git tag -f old && git checkout -f new && git clean -fd && git status)

.github/workflows/doc-build.yml

@@ -213,6 +213,9 @@ jobs:
             (cd doc && mv .git ../git && mv .gitattributes ../gitattributes)
             mv CHANGES.html doc
           fi
+          # Create the robots.txt file to discourage web crawlers from indexing doc preview webpages
+          echo "User-agent: *" > doc/robots.txt
+          echo "Disallow: /" >> doc/robots.txt
           # Zip everything for increased performance
           zip -r doc.zip doc
 

CITATION.cff

@@ -4,8 +4,8 @@ title: SageMath
 abstract: SageMath is a free open-source mathematics software system.
 authors:
 - name: "The SageMath Developers"
-version: 10.5.beta5
+version: 10.5.beta6
 doi: 10.5281/zenodo.8042260
-date-released: 2024-09-22
+date-released: 2024-09-29
 repository-code: "https://github.com/sagemath/sage"
 url: "https://www.sagemath.org/"

VERSION.txt

@@ -1 +1 @@
-SageMath version 10.5.beta5, Release Date: 2024-09-22
+SageMath version 10.5.beta6, Release Date: 2024-09-29

build/pkgs/configure/checksums.ini

@@ -1,3 +1,3 @@
 tarball=configure-VERSION.tar.gz
-sha1=2cdffd348b8a4de62b51e1f6c37a7d414004c09e
-sha256=273c37842eedefc3575e34bb14819ab3738a32c39ae634f2342bb50baa740c60
+sha1=140d921780212198287a0d626b8c9655d4408f7a
+sha256=4f82ec8bdb67c4dffd43daddd5160e8f9c624f6a5cf16c4128bfab2e5ddca459

build/pkgs/configure/package-version.txt

@@ -1 +1 @@
-9b58ceaa68960b38142f27fdfc04373301da4e46
+2b4fe39e420df022d34a67fbc820252618e15f83

build/pkgs/fricas/checksums.ini

@@ -1,4 +1,4 @@
 tarball=fricas-VERSION-full.tar.bz2
-sha1=2f1e1bbbad7e04a7114ffbd93eeedadc5db32272
-sha256=fc2112ad45ba7b45ac423165f32bd5b244622107a1e4e1d56b9136f96746f2a0
+sha1=c5104c92808ff01a02ecdd3f412d44da3b2c21fb
+sha256=32b87461ef079659e97247ad0a771ec8cf0d5a0f934788d67d37fb7acf63f9c4
 upstream_url=https://github.com/fricas/fricas/releases/download/VERSION/fricas-VERSION-full.tar.bz2

build/pkgs/fricas/package-version.txt

@@ -1 +1 @@
-1.3.10
+1.3.11

build/pkgs/gc/checksums.ini

@@ -1,4 +1,4 @@
 tarball=gc-VERSION.tar.gz
-sha1=3f543532c47e592a8f5ea6f7a529c8ed7465a5c7
-sha256=b9183fe49d4c44c7327992f626f8eaa1d8b14de140f243edb1c9dcff7719a7fc
+sha1=1c8d7bde86aa98df957563982f38c583c2c6707f
+sha256=7649020621cb26325e1fb5c8742590d92fb48ce5c259b502faf7d9fb5dabb160
 upstream_url=https://github.com/ivmai/bdwgc/releases/download/vVERSION/gc-VERSION.tar.gz

build/pkgs/gc/package-version.txt

@@ -1 +1 @@
-8.2.6
+8.2.8

build/pkgs/maxima/checksums.ini

@@ -1,4 +1,4 @@
 tarball=maxima-VERSION.tar.gz
-sha1=1010594e6d6082bbd8efaac1b7756ec1721a4ed5
-sha256=7390f06b48da65c9033e8b2f629b978b90056454a54022db7de70e2225aa8b07
+sha1=fff13f4c010e6daab65fbc8a6895c2bd79925177
+sha256=9104021b24fd53e8c03a983509cb42e937a925e8c0c85c335d7709a14fd40f7a
 upstream_url=https://sourceforge.net/projects/maxima/files/Maxima-source/VERSION-source/maxima-VERSION.tar.gz/download

build/pkgs/maxima/package-version.txt

@@ -1 +1 @@
-5.46.0
+5.47.0

build/pkgs/mpmath/version_requirements.txt

@@ -1 +1 @@
-mpmath >=1.1.0
+mpmath >=1.1.0, <1.4

build/pkgs/openblas/checksums.ini

@@ -1,4 +1,4 @@
 tarball=openblas-VERSION.tar.gz
-sha1=af6dce0e486e684be842053fcbd98eaf97e39749
-sha256=4e6e4f5cb14c209262e33e6816d70221a2fe49eb69eaf0a06f065598ac602c68
+sha1=f75172274a7ce69901605b8c759e2e0891c9b7f4
+sha256=f1003466ad074e9b0c8d421a204121100b0751c96fc6fcf3d1456bd12f8a00a1
 upstream_url=https://github.com/xianyi/OpenBLAS/archive/vVERSION.tar.gz

build/pkgs/openblas/package-version.txt

@@ -1 +1 @@
-0.3.26
+0.3.28

build/pkgs/sage_conf/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sage-conf ~= 10.5b5
+sage-conf ~= 10.5b6

build/pkgs/sage_docbuild/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sage-docbuild ~= 10.5b5
+sage-docbuild ~= 10.5b6

build/pkgs/sage_setup/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sage-setup ~= 10.5b5
+sage-setup ~= 10.5b6

build/pkgs/sage_sws2rst/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sage-sws2rst ~= 10.5b5
+sage-sws2rst ~= 10.5b6

build/pkgs/sagelib/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-standard ~= 10.5b5
+sagemath-standard ~= 10.5b6

build/pkgs/sagemath_bliss/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-bliss ~= 10.5b5
+sagemath-bliss ~= 10.5b6

build/pkgs/sagemath_categories/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-categories ~= 10.5b5
+sagemath-categories ~= 10.5b6

build/pkgs/sagemath_coxeter3/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-coxeter3 ~= 10.5b5
+sagemath-coxeter3 ~= 10.5b6

build/pkgs/sagemath_environment/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-environment ~= 10.5b5
+sagemath-environment ~= 10.5b6

build/pkgs/sagemath_mcqd/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-mcqd ~= 10.5b5
+sagemath-mcqd ~= 10.5b6

build/pkgs/sagemath_meataxe/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-meataxe ~= 10.5b5
+sagemath-meataxe ~= 10.5b6

build/pkgs/sagemath_objects/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-objects ~= 10.5b5
+sagemath-objects ~= 10.5b6

build/pkgs/sagemath_repl/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-repl ~= 10.5b5
+sagemath-repl ~= 10.5b6

build/pkgs/sagemath_sirocco/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-sirocco ~= 10.5b5
+sagemath-sirocco ~= 10.5b6

build/pkgs/sagemath_tdlib/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-tdlib ~= 10.5b5
+sagemath-tdlib ~= 10.5b6

build/pkgs/zlib/spkg-configure.m4

@@ -1,7 +1,8 @@
 SAGE_SPKG_CONFIGURE([zlib], [
+    PKG_CHECK_MODULES([zlib], [zlib >= 1.2.11], [zlib_cv_pc=yes], [zlib_cv_pc=no])
     AC_CHECK_LIB([z], [inflateEnd], [zlib_cv_libz=yes], [zlib_cv_libz=no])
     AC_CHECK_HEADER([zlib.h], [zlib_cv_zlib_h=yes], [zlib_cv_zlib_h=no])
-    if test "$zlib_cv_libz" = "yes" && test "$zlib_cv_zlib_h" = "yes"; then
+    if test "$zlib_cv_pc" = "yes" && test "$zlib_cv_libz" = "yes" && test "$zlib_cv_zlib_h" = "yes"; then
         PKG_CHECK_MODULES([LIBPNG], [libpng >= 1.2], [], [
             dnl inflateValidate is needed for Sage's libpng, newer than 1.2; this ensures
             dnl we have the minimum required for building zlib version

configure.ac

@@ -450,7 +450,7 @@ AC_ARG_ENABLE([cvxopt],
 AC_ARG_ENABLE([notebook],
   AS_HELP_STRING([--disable-notebook],
                  [disable build of the Jupyter notebook and related packages]), [
-    for pkg in notebook nbconvert beautifulsoup4 sagenb_export nbformat nbclient terminado send2trash prometheus_client mistune pandocfilters bleach defusedxml jsonschema jupyter_jsmol argon2_cffi argon2_cffi_bindings webencodings tinycss2 ipympl soupsieve fastjsonschema anyio arrow async_lru fqdn isoduration json5 jsonpointer jsonschema_specifications jupyter_events jupyter_lsp jupyter_server jupyter_server_terminals jupyterlab jupyterlab_server jupyterlab_pygments jupyterlab_mathjax2 jupyter_sphinx notebook_shim overrides python_json_logger pyyaml referencing rfc3339_validator rfc3986_validator sniffio types_python_dateutil uri_template webcolors websocket_client; do
+    for pkg in notebook nbconvert beautifulsoup4 sagenb_export nbformat nbclient terminado send2trash prometheus_client mistune pandocfilters bleach defusedxml jsonschema jupyter_jsmol argon2_cffi argon2_cffi_bindings webencodings tinycss2 ipympl soupsieve fastjsonschema anyio arrow async_lru fqdn isoduration json5 jsonpointer jsonschema_specifications jupyter_events jupyter_lsp jupyter_server jupyter_server_terminals jupyterlab jupyterlab_server jupyterlab_pygments jupyterlab_mathjax2 jupyter_sphinx notebook_shim overrides python_json_logger pyyaml referencing rfc3339_validator rfc3986_validator sniffio types_python_dateutil uri_template webcolors websocket_client httpx httpcore h11; do
       AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
     done
   ])
@@ -463,6 +463,12 @@ AC_ARG_ENABLE([r],
     done
   ])
 
+AC_ARG_ENABLE([sagetex],
+  AS_HELP_STRING([--disable-sagetex],
+                 [don't build SageTeX]), [
+    AS_VAR_SET([SAGE_ENABLE_sagetex], [$enableval])
+  ])
+
 AC_ARG_ENABLE([doc],
   AS_HELP_STRING([--disable-doc],
                  [disable build of the Sage documentation and packages depending on it]), [

pkgs/sage-conf/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sage-conf_conda/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sage-conf_pypi/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sage-docbuild/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sage-setup/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sage-sws2rst/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sagemath-bliss/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sagemath-categories/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sagemath-coxeter3/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sagemath-environment/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sagemath-mcqd/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sagemath-meataxe/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sagemath-objects/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sagemath-repl/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sagemath-sirocco/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

pkgs/sagemath-tdlib/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

src/VERSION.txt

@@ -1 +1 @@
-10.5.beta5
+10.5.beta6

src/bin/sage-version.sh

@@ -4,6 +4,6 @@
 # which stops "setup.py develop" from rewriting it as a Python file.
 :
 # This file is auto-generated by the sage-update-version script, do not edit!
-SAGE_VERSION='10.5.beta5'
-SAGE_RELEASE_DATE='2024-09-22'
-SAGE_VERSION_BANNER='SageMath version 10.5.beta5, Release Date: 2024-09-22'
+SAGE_VERSION='10.5.beta6'
+SAGE_RELEASE_DATE='2024-09-29'
+SAGE_VERSION_BANNER='SageMath version 10.5.beta6, Release Date: 2024-09-29'

src/doc/de/tutorial/interactive_shell.rst

@@ -356,9 +356,9 @@ dem man nachgehen sollte.
     sage: time g = maple('1938^99484')
     CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
     Wall time: 0.11
-    sage: gap(0)
+    sage: libgap(0)
     0
-    sage: time g = gap.eval('1938^99484;;')
+    sage: time g = libgap.eval('1938^99484;')
     CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
     Wall time: 1.02
 
@@ -742,7 +742,7 @@ nicht erlaubt.
 
 ::
 
-    sage: a = gap(2)
+    sage: a = libgap(2)
     sage: a.save('a')
     sage: load('a')
     Traceback (most recent call last):

src/doc/en/constructions/groups.rst

@@ -124,31 +124,25 @@ You can compute conjugacy classes of a finite group using "natively"::
 
 You can use the Sage-GAP interface::
 
-    sage: gap.eval("G := Group((1,2)(3,4),(1,2,3))")
-    'Group([ (1,2)(3,4), (1,2,3) ])'
-    sage: gap.eval("CG := ConjugacyClasses(G)")
-    '[ ()^G, (2,3,4)^G, (2,4,3)^G, (1,2)(3,4)^G ]'
-    sage: gap.eval("gamma := CG[3]")
-    '(2,4,3)^G'
-    sage: gap.eval("g := Representative(gamma)")
-    '(2,4,3)'
+    sage: libgap.eval("G := Group((1,2)(3,4),(1,2,3))")
+    Group([ (1,2)(3,4), (1,2,3) ])
+    sage: libgap.eval("CG := ConjugacyClasses(G)")
+    [ ()^G, (2,3,4)^G, (2,4,3)^G, (1,2)(3,4)^G ]
+    sage: libgap.eval("gamma := CG[3]")
+    (2,4,3)^G
+    sage: libgap.eval("g := Representative(gamma)")
+    (2,4,3)
 
 Or, here's another (more "pythonic") way to do this type of computation::
 
-    sage: G = gap.Group('[(1,2,3), (1,2)(3,4), (1,7)]')
+    sage: G = libgap.eval("Group([(1,2,3), (1,2)(3,4), (1,7)])")
     sage: CG = G.ConjugacyClasses()
     sage: gamma = CG[2]
     sage: g = gamma.Representative()
     sage: CG; gamma; g
-    [ ConjugacyClass( SymmetricGroup( [ 1, 2, 3, 4, 7 ] ), () ),
-      ConjugacyClass( SymmetricGroup( [ 1, 2, 3, 4, 7 ] ), (4,7) ),
-      ConjugacyClass( SymmetricGroup( [ 1, 2, 3, 4, 7 ] ), (3,4,7) ),
-      ConjugacyClass( SymmetricGroup( [ 1, 2, 3, 4, 7 ] ), (2,3)(4,7) ),
-      ConjugacyClass( SymmetricGroup( [ 1, 2, 3, 4, 7 ] ), (2,3,4,7) ),
-      ConjugacyClass( SymmetricGroup( [ 1, 2, 3, 4, 7 ] ), (1,2)(3,4,7) ),
-      ConjugacyClass( SymmetricGroup( [ 1, 2, 3, 4, 7 ] ), (1,2,3,4,7) ) ]
-    ConjugacyClass( SymmetricGroup( [ 1, 2, 3, 4, 7 ] ), (4,7) )
-    (4,7)
+    [ ()^G, (4,7)^G, (3,4,7)^G, (2,3)(4,7)^G, (2,3,4,7)^G, (1,2)(3,4,7)^G, (1,2,3,4,7)^G ]
+    (3,4,7)^G
+    (3,4,7)
 
 .. index::
    pair: group; normal subgroups
@@ -162,29 +156,29 @@ If you want to find all the normal subgroups of a permutation group
 :math:`G` (up to conjugacy), you can use Sage's interface to GAP::
 
     sage: G = AlternatingGroup( 5 )
-    sage: gap(G).NormalSubgroups()
-    [ AlternatingGroup( [ 1 .. 5 ] ), Group( () ) ]
+    sage: libgap(G).NormalSubgroups()
+    [ Alt( [ 1 .. 5 ] ), Group(()) ]
 
 or
 
 ::
 
-    sage: G = gap("AlternatingGroup( 5 )")
+    sage: G = libgap.AlternatingGroup( 5 )
     sage: G.NormalSubgroups()
-    [ AlternatingGroup( [ 1 .. 5 ] ), Group( () ) ]
+    [ Alt( [ 1 .. 5 ] ), Group(()) ]
 
 Here's another way, working more directly with GAP::
 
-    sage: print(gap.eval("G := AlternatingGroup( 5 )"))
+    sage: libgap.eval("G := AlternatingGroup( 5 )")
     Alt( [ 1 .. 5 ] )
-    sage: print(gap.eval("normal := NormalSubgroups( G )"))
+    sage: libgap.eval("normal := NormalSubgroups( G )")
     [ Alt( [ 1 .. 5 ] ), Group(()) ]
-    sage: G = gap.new("DihedralGroup( 10 )")
+    sage: G = libgap.eval("DihedralGroup( 10 )")
     sage: G.NormalSubgroups().SortedList()
-    [ Group( <identity> of ... ), Group( [ f2 ] ), Group( [ f1, f2 ] ) ]
-    sage: print(gap.eval("G := SymmetricGroup( 4 )"))
+    [ Group([  ]), Group([ f2 ]), <pc group of size 10 with 2 generators> ]
+    sage: libgap.eval("G := SymmetricGroup( 4 )")
     Sym( [ 1 .. 4 ] )
-    sage: print(gap.eval("normal := NormalSubgroups( G );"))
+    sage: libgap.eval("normal := NormalSubgroups( G );")
     [ Sym( [ 1 .. 4 ] ), Alt( [ 1 .. 4 ] ), Group([ (1,4)(2,3),  ... ]),
           Group(()) ]
 
@@ -201,7 +195,7 @@ How do you compute the center of a group in Sage?
 Although Sage calls GAP to do the computation of the group center,
 ``center`` is "wrapped" (i.e., Sage has a class PermutationGroup with
 associated class method "center"), so the user does not need to use
-the ``gap`` command. Here's an example::
+the ``libgap`` command. Here's an example::
 
     sage: G = PermutationGroup(['(1,2,3)(4,5)', '(3,4)'])
     sage: G.center()

src/doc/en/constructions/interface_issues.rst

@@ -92,7 +92,7 @@ Sage and other computer algebra systems
 
 If ``foo`` is a Pari, GAP ( without ending semicolon), Singular,
 Maxima command, resp., enter ``gp("foo")`` for Pari,
-``gap.eval("foo")}`` ``singular.eval("foo")``, ``maxima("foo")``, resp..
+``libgap.eval("foo")}`` ``singular.eval("foo")``, ``maxima("foo")``, resp..
 These programs merely send the command string to the external
 program, execute it, and read the result back into Sage. Therefore,
 these will not work if the external program is not installed and in

src/doc/en/constructions/linear_algebra.rst

@@ -306,11 +306,11 @@ Finally, you can use Sage's GAP interface as well to compute
 
 ::
 
-    sage: print(gap.eval("A := [[1,2,3],[4,5,6],[7,8,9]]"))
+    sage: A = libgap([[1,2,3],[4,5,6],[7,8,9]]); A
     [ [ 1, 2, 3 ], [ 4, 5, 6 ], [ 7, 8, 9 ] ]
-    sage: print(gap.eval("v := Eigenvectors( Rationals,A)"))
+    sage: libgap(QQ).Eigenvectors(A)
     [ [ 1, -2, 1 ] ]
-    sage: print(gap.eval("lambda := Eigenvalues( Rationals,A)"))
+    sage: libgap(QQ).Eigenvalues(A)
     [ 0 ]
 
 .. _section-rref: