connection: updated parsing config from yaml, test passes

saezlab · Sep 20, 2024 · 18e0c70 · 18e0c70
1 parent d6bc1a5
commit 18e0c70
Showing 1 changed file with 4 additions and 5 deletions.
diff --git a/omnipath_metabo/schema/_connection.py b/omnipath_metabo/schema/_connection.py
@@ -16,7 +16,7 @@ def __init__(
         self._parse_param()
 
 
-    def parse_param(self) -> None:
+    def _parse_param(self) -> None:
 
         self._from_file()
 
@@ -25,10 +25,9 @@ def _from_file(self) -> None:
 
         if isinstance(self._param, str) and os.path.exists(self._param):
 
-            self._param = yaml.load(
-                closing(open(self._param, 'r')),
-                Loader = yaml.FullLoader,
-            )
+            with closing(open(self._param, 'r')) as fp:
+
+                self._param = yaml.load(fp, Loader = yaml.FullLoader)
 
     def _uri(self) -> str: