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Fixed SCpubr's broken reference link in liana_tutorial.Rmd #167

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merged 2 commits into from
Aug 6, 2024
Merged

Fixed SCpubr's broken reference link in liana_tutorial.Rmd #167

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1bd880d
Enabled syntax highlight for R code in README.md and added liana.Rpro…
enblacar Jul 26, 2024
63fa793
Fixed broken link in SCpubr's reference in liana_tutorial.Rmd.
enblacar Jul 26, 2024
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -15,4 +15,5 @@ inst/cytosig_signature_centroid.csv
.Rhistory
LIANA.Rproj
.gitattributes
liana.Rproj

2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -7,7 +7,7 @@
LIANA enables the use of any combination of ligand-receptor methods and resources, and their consensus. A faster and memory efficient Python implementation is available [here](https://github.com/saezlab/liana-py).

## Install LIANA
```{r}
```r
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")

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2 changes: 1 addition & 1 deletion vignettes/liana_tutorial.Rmd
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Expand Up @@ -208,7 +208,7 @@ p <- chord_freq(liana_trunc,
```


For more advanced visualization options, we kindly refer the user to [SCPubr](https://enblacar.github.io/SCpubr-book/21-LigandReceptorPlot.html).
For more advanced visualization options, we kindly refer the user to [SCpubr](https://github.com/enblacar/SCpubr/) (see [`SCpubr::do_LigandReceptorPlot()`](https://enblacar.github.io/SCpubr-book-v1/21-LigandReceptorPlot.html)).


## Run any method of choice.
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