add date to news and news to readme

NEWS.md

@@ -1,4 +1,4 @@
-# LIANA 0.1.5 (XX.07.22)
+# LIANA 0.1.5 (04.07.22)
 
 ## Changes
 - Re-implemented the `RRA` method from  Kolde et al., 2012, as a consequence of

README.md

@@ -3,15 +3,6 @@
 <!-- badges: end -->
 
 # LIANA: a LIgand-receptor ANalysis frAmework <img src="https://www.dropbox.com/s/z6s7cp00kbbm1s9/liana_logo.png?raw=1" align="right" height="100">
-
-The continuous developments of single-cell RNA-Seq (scRNA-Seq) have sparked
-an immense interest in understanding intercellular crosstalk. Multiple
-tools and resources that aid the investigation of cell-cell communication (CCC)
-were published recently.
-However, these methods and resources are usually in a fixed combination of a
-tool and its corresponding resource, but in principle any resource could be
-combined with any method.  
-
 
 ## Install LIANA  
 ```{r}
@@ -44,7 +35,16 @@ Additional tutorials:
 
 
 ## LIANA Framework
-
+
+The continuous developments of single-cell RNA-Seq (scRNA-Seq) have sparked
+an immense interest in understanding intercellular crosstalk. Multiple
+tools and resources that aid the investigation of cell-cell communication (CCC)
+were published recently.
+However, these methods and resources are usually in a fixed combination of a
+tool and its corresponding resource, but in principle any resource could be
+combined with any method.  
+
+
 To this end, we built a framework to decouple the methods from their corresponding resources.
 
 LIANA also goes a step further as it provides:
@@ -128,13 +128,19 @@ as well as to explore custom filter options see [customizing OmniPath resources]
 If you are interested in making use of the LIANA architecture for your own method, [this vignette](https://saezlab.github.io/liana/articles/liana_devel.html) provides instructions how to obtain a comprehensive table of LR statistics, which can then be used by custom scoring functions.
 In the [same vignette](https://saezlab.github.io/liana/articles/liana_devel.html) are also instructions how to install and run the original methods via a convenient R wrapper, e.g. for their benchmark.
 
-  
+
 
 ## Contact
 We appreciate any feedback, so please do not hesitate to open an issue on the [liana github page](https://github.com/saezlab/liana)!  
 
 
 
+## NEWS
+
+<strong> We are commited to the further developments of LIANA and we refer the users to 
+check the [NEWS](https://github.com/saezlab/liana/blob/master/NEWS.md) page after very update! </strong>
+
+
 ### Citing `LIANA`:
 Dimitrov, D., Türei, D., Garrido-Rodriguez M., Burmedi P.L., Nagai, J.S., Boys, C., Flores, R.O.R., Kim, H., Szalai, B., Costa, I.G., Valdeolivas, A., Dugourd, A. and Saez-Rodriguez, J. Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data.
 *Nat Commun 13*, 3224 (2022). [https://doi.org/10.1038/s41467-022-30755-0](https://www.nature.com/articles/s41467-022-30755-0)

vignettes/liana_ortho.Rmd

@@ -116,7 +116,7 @@ documentation for more information.
 
 
 
-## ## Generating an External Dictionary
+## Generating an External Dictionary
 In order to convert a human resource to any other organism, we need a dictionary
 which maps human gene symbols to their orthologs from another species, which 
 might not be available via OmniPath.