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updated git address for BioC/limma #39

updated git address for BioC/limma

updated git address for BioC/limma #39

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
# This workflow tests if the package can be installed from github from within
# a github action.
on:
push:
branches: [development, main]
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}
- {os: ubuntu-latest, r: 'release'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-pandoc@v2
- name: Install libglpk40
if: ${{ matrix.config.os == 'ubuntu-latest' }}
run: sudo apt-get install -y libglpk40
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- name: Install pak
run: Rscript -e 'install.packages("pak")'
- name: Install MetaProViz from git by pak
run: Rscript -e 'pak::pkg_install("saezlab/MetaProViz")' #we install from GitHub as if we are a random user