Skip to content

Commit

Permalink
Update mutation catalogue url
Browse files Browse the repository at this point in the history
  • Loading branch information
ryanjameskennedy committed Feb 27, 2024
1 parent 0ffacd3 commit 309e89e
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion jasentool/who.py
Original file line number Diff line number Diff line change
Expand Up @@ -284,7 +284,7 @@ def _parse(self, fasta_filepath, gff_filepath, download_dir):
"""Parse WHO excel file"""
utils = Utils()
#who_url = "https://apps.who.int/iris/bitstream/handle/10665/341906/WHO-UCN-GTB-PCI-2021.7-eng.xlsx"
who_url = "https://raw.githubusercontent.com/GTB-tbsequencing/mutation-catalogue-2023/main/Final%20Result%20Files/WHO-UCN-TB-2023.5-eng.xlsx"
who_url = "https://raw.githubusercontent.com/GTB-tbsequencing/mutation-catalogue-2023/main/Final%20Result%20Files/WHO-UCN-TB-2023.6-eng.xlsx"
who_filepath = os.path.join(download_dir, "who.xlsx")
utils.download_and_save_file(who_url, who_filepath)
_, catalogue, _ = self.read_files(gff_filepath, who_filepath, fasta_filepath)
Expand Down

0 comments on commit 309e89e

Please sign in to comment.