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add support for multiple input files #25

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@tolot27 tolot27 commented May 27, 2020

This PR adds support for multiple input files and can be a workaround for #6.

Base automatically changed from master to main March 15, 2021 02:59
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splaisan commented Nov 6, 2023

I am trying to achieve this as ONT generagtes multiple fastq files, can yuo please indicate how we can launch filtlong with multiple inputs, I tried fastq_pass/*.fastq.gz and <(zcat fastq_pass/*.fastq.gz) as last argument and they both did only one pass and died.
My only workaround is to zcat the multiple to a single first then run filtlong on this (loosing time and disk space in the process)
thanks for any example command that works

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