Added functionality to get node features from segmentation hypotheses #208
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Reference: napari/napari github workflows | |
| name: test PR | |
| on: | |
| pull_request: | |
| types: [opened, synchronize, reopened, ready_for_review] | |
| branches: | |
| - main | |
| jobs: | |
| test: | |
| name: ${{ matrix.platform }} ${{ matrix.python }} ${{ matrix.toxenv || matrix.backend }} | |
| if: github.event.pull_request.draft == false | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ubuntu-latest] | |
| python: ["3.10", "3.12"] | |
| backend: [pyqt5] | |
| include: | |
| - python: 3.11 | |
| platform: windows-latest | |
| backend: pyqt5 | |
| - python: 3.11 | |
| platform: macos-13 # latest not-arm version | |
| backend: pyside2 | |
| - python: 3.11 | |
| platform: ubuntu-latest | |
| backend: pyqt6 | |
| - python: 3.11 | |
| platform: ubuntu-latest | |
| backend: pyside2 | |
| - python: 3.11 # only this run execute coverage | |
| platform: ubuntu-latest | |
| backend: pyside6 | |
| coverage: true | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v4 | |
| # see https://github.com/actions/runner-images/issues/709#issuecomment-612569242 | |
| - name: Workaround to free up space on github runner | |
| if: runner.os == 'Linux' | |
| run: sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| - name: Set up Python ${{ matrix.python }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - uses: tlambert03/setup-qt-libs@v1 | |
| - uses: yezz123/setup-uv@v4 | |
| with: | |
| uv-venv: "ultrack-env" | |
| # strategy borrowed from vispy for installing opengl libs on windows | |
| - name: Install Windows OpenGL | |
| if: runner.os == 'Windows' | |
| run: | | |
| git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git | |
| powershell gl-ci-helpers/appveyor/install_opengl.ps1 | |
| if (Test-Path -Path "C:\Windows\system32\opengl32.dll" -PathType Leaf) {Exit 0} else {Exit 1} | |
| # tox and tox-gh-actions will take care of the "actual" installation | |
| # of python dependendencies into a virtualenv. see tox.ini for more | |
| - name: Install dependencies | |
| run: | | |
| uv pip install setuptools tox tox-gh-actions | |
| uv pip install ".[test]" | |
| # here we pass off control of environment creation and running of tests to tox | |
| # tox-gh-actions, installed above, helps to convert environment variables into | |
| # tox "factors" ... limiting the scope of what gets tested on each platform | |
| # for instance, on ubuntu-latest with python 3.8, it would be equivalent to this command: | |
| # `tox -e py38-linux-pyqt,py38-linux-pyside` | |
| # see tox.ini for more | |
| - name: Test with tox | |
| uses: GabrielBB/xvfb-action@v1 | |
| with: | |
| run: python -m tox | |
| env: | |
| PLATFORM: ${{ matrix.platform }} | |
| BACKEND: ${{ matrix.backend }} | |
| TOXENV: ${{ matrix.toxenv }} | |
| - name: Coverage | |
| if: ${{ matrix.coverage }} | |
| uses: codecov/codecov-action@v4 |