Create Docker images for v1.2.1.

Docker/Dockerfile → Docker/full/Dockerfile

@@ -1,4 +1,4 @@
-FROM r-base:3.6.1
+FROM r-base:3.6.2
 
 ##----------------------------------------------------------------------------##
 ## LABELS
@@ -7,10 +7,10 @@ FROM r-base:3.6.1
 LABEL org.label-schema.name = "cerebro"
 LABEL org.label-schema.description = "Cerebro as Docker container."
 LABEL org.label-schema.url = "https://github.com/romanhaa/Cerebro"
-LABEL org.label-schema.schema-version = "1.1.0"
+LABEL org.label-schema.schema-version = "1.2.1"
 LABEL maintainer = "[email protected]"
-LABEL org.label-schema.version = "1.1.0"
-LABEL org.label-schema.build-date = "2019-09-23T00:00:00.0Z"
+LABEL org.label-schema.version = "1.2.1"
+LABEL org.label-schema.build-date = "2020-04-04T00:00:00.0Z"
 
 ##----------------------------------------------------------------------------##
 ## SYSTEM LIBRARIES
@@ -20,7 +20,6 @@ RUN apt-get update --yes \
  && apt-get upgrade --yes \
  && apt-get install --yes \
   python-dev \
-  python-pip \
   python3-dev \
   python3-pip \
   python3-tk \
@@ -41,19 +40,15 @@ RUN pip3 install louvain python-igraph scanpy umap-learn
 ## R PACKAGES
 ##----------------------------------------------------------------------------##
 
-# dependencies + Seurat v3 + monocle
-RUN Rscript -e 'install.packages("BiocManager", repos = "http://cran.us.r-project.org")'
-RUN Rscript -e 'BiocManager::install(c("devtools","remotes"), update = TRUE, ask = FALSE)'
-RUN Rscript -e 'BiocManager::install("Seurat")'
-RUN Rscript -e 'BiocManager::install("monocle")'
+# install some required packages + Seurat v3 + monocle
+RUN Rscript -e 'install.packages("BiocManager", Ncpus = 2, repos = "http://cran.us.r-project.org")'
+RUN Rscript -e 'BiocManager::install(c("devtools","remotes"), Ncpus = 2, update = TRUE, ask = FALSE)'
+RUN Rscript -e 'BiocManager::install("Seurat", Ncpus = 2)'
+RUN Rscript -e 'BiocManager::install("monocle", Ncpus = 2)'
 
 # cerebroApp
 RUN Rscript -e 'devtools::install_github("romanhaa/cerebroApp")'
 
-# Seurat v2.3.4
-RUN mkdir /other_R_packages
-RUN Rscript -e 'devtools::install_version("Seurat", version = "2.3.4", repos = "http://cran.us.r-project.org", lib = "/other_R_packages")'
-
 ##----------------------------------------------------------------------------##
 ## FINISHING
 ##----------------------------------------------------------------------------##