vignettes updated

robboyd · Jul 29, 2021 · aacc515 · aacc515
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Showing 3 changed files with 9 additions and 6 deletions.
diff --git a/vignettes/figure/unnamed-chunk-12-1.png b/vignettes/figure/unnamed-chunk-12-1.png
diff --git a/vignettes/occAssess.Rmd b/vignettes/occAssess.Rmd
@@ -254,6 +254,9 @@ spatBias <- assessSpatialBias(dat = spDat,
                               year = "year", 
                               spatialUncertainty = "spatialUncertainty",
                               identifier = "identifier")
+#> Registered S3 method overwritten by 'spatstat.geom':
+#>   method     from
+#>   print.boxx cli
 #> Warning in FUN(X[[i]], ...): Fewer than 100 records in period 1 for Syrphidae . View this result with caution.
 #> Warning in FUN(X[[i]], ...): Fewer than 100 records in period 2 for Syrphidae . View this result with caution.
 #> Warning in FUN(X[[i]], ...): Fewer than 100 records in period 3 for Syrphidae . View this result with caution.
@@ -263,9 +266,9 @@ spatBias <- assessSpatialBias(dat = spDat,
 
 str(spatBias$data)
 #> 'data.frame':	14 obs. of  5 variables:
-#>  $ mean      : num  0.391 0.435 0.274 0.248 0.276 ...
-#>  $ upper     : num  0.418 0.444 0.288 0.257 0.284 ...
-#>  $ lower     : num  0.366 0.427 0.263 0.241 0.268 ...
+#>  $ mean      : num  0.397 0.437 0.278 0.247 0.277 ...
+#>  $ upper     : num  0.424 0.449 0.288 0.257 0.289 ...
+#>  $ lower     : num  0.377 0.416 0.272 0.234 0.266 ...
 #>  $ Period    : chr  "1" "2" "3" "4" ...
 #>  $ identifier: chr  "Phyllostomidae" "Phyllostomidae" "Phyllostomidae" "Phyllostomidae" ...
 

diff --git a/vignettes/occAssessUKRandom40SpeciesVaryingRecNumbers.Rmd b/vignettes/occAssessUKRandom40SpeciesVaryingRecNumbers.Rmd
@@ -262,9 +262,9 @@ spatBias <- assessSpatialBias(dat = spDat,
 
 str(spatBias$data)
 #> 'data.frame':	10 obs. of  5 variables:
-#>  $ mean      : num  1.011 0.996 1.008 0.995 0.991 ...
-#>  $ upper     : num  1.02 1.01 1.02 1.01 1 ...
-#>  $ lower     : num  1.002 0.989 1 0.982 0.978 ...
+#>  $ mean      : num  1.009 0.999 1.001 1.001 0.99 ...
+#>  $ upper     : num  1.03 1.01 1.02 1.01 1 ...
+#>  $ lower     : num  0.991 0.988 0.988 0.987 0.979 ...
 #>  $ Period    : chr  "1" "2" "3" "4" ...
 #>  $ identifier: chr  "survey1" "survey1" "survey1" "survey1" ...