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pod5 available via conda
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JannesSP committed Jul 19, 2023
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4 changes: 2 additions & 2 deletions README.md
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pip install read5
```
### Conda
Pod5 is currently not available via conda (27.06.2023). Please install it using pip in your conda environment.
Pod5 is now available via [conda](https://anaconda.org/jannessp/pod5) (19.07.2023).

```bash
conda install mamba
mamba create -n read5 -c jannessp read5
conda activate read5
pip install pod5 # needed as no pod5 conda package available yet
```
Alternatively you can create the environment using the [conda.recipe/env.yml](conda.recipe/env.yml) file.
```bash
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6 changes: 3 additions & 3 deletions conda.recipe/meta.yaml
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Expand Up @@ -20,15 +20,14 @@ requirements:
- numpy >=1.20
- h5py >=3.8
- ont_vbz_hdf_plugin >=1.0
# - pod5 >=0.2.3 # currently not available in conda
- pod5 >=0.2.3

test:
source_files:
- tests
requires:
- pytest
commands:
- pip install pod5
- pytest

about:
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extra:
recipe-maintainers:
- 38325576
- 38325576
- JannesSP

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