add cram support to bowtie2 (#5180) #2
ktrappetest.yml
on: push
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
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Annotations
52 errors and 3 warnings
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nf-test (bowtie2/align, docker)
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nf-test (bowtie2/align, singularity)
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nf-test (cellpose, docker)
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nf-test (bowtie2/align, conda)
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nf-test (fastp, conda)
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nf-test (fastp, singularity)
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nf-test (cellpose, singularity)
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nf-test (fastp, docker)
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nf-test (gatk4/splitncigarreads, conda)
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nf-test (gatk4/splitncigarreads, singularity)
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nf-test (gatk4/splitncigarreads, docker)
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nf-test (minimap2/index, conda)
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nf-test (minimap2/index, singularity)
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nf-test (minimap2/index, docker)
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nf-test (snpeff/snpeff, singularity)
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nf-test (snpeff/snpeff, conda)
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nf-test (subworkflows/fastq_align_bowtie2, docker)
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nf-test (snpeff/snpeff, docker)
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nf-test (subworkflows/fastq_align_dna, conda)
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nf-test (subworkflows/fastq_align_dna, docker)
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nf-test (subworkflows/fastq_align_bowtie2, singularity)
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nf-test (subworkflows/fastq_align_bowtie2, conda)
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nf-test (subworkflows/fastq_align_dna, singularity)
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nf-test (subworkflows/fastq_fastqc_umitools_fastp, conda)
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nf-test (wisecondorx/convert, conda)
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nf-test (subworkflows/fastq_fastqc_umitools_fastp, docker)
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nf-test (wisecondorx/gender, singularity)
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nf-test (subworkflows/fastq_fastqc_umitools_fastp, singularity)
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nf-test (wisecondorx/convert, docker)
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nf-test (wisecondorx/gender, conda)
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nf-test (wisecondorx/convert, singularity)
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nf-test (wisecondorx/gender, docker)
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nf-test (wisecondorx/newref, conda)
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nf-test (wisecondorx/newref, docker)
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nf-test (wisecondorx/predict, docker)
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nf-test (wisecondorx/newref, singularity)
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nf-test (wisecondorx/predict, conda)
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nf-test (wisecondorx/predict, singularity)
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nf-core-lint (fastp)
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nf-core-lint (cellpose)
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nf-core-lint (minimap2/index)
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nf-core-lint (bowtie2/align)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (gatk4/splitncigarreads)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_align_dna)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (snpeff/snpeff)
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nf-core-lint (subworkflows/fastq_fastqc_umitools_fastp)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (wisecondorx/newref)
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nf-core-lint (wisecondorx/predict)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_align_bowtie2)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (wisecondorx/convert)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (wisecondorx/gender)
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confirm-pass
Process completed with exit code 1.
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nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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