Update references to rjournal_web_article -> rjournal_article

R/rj_article.R

@@ -122,7 +122,13 @@ rjournal_article <- function(toc = FALSE, self_contained = FALSE,
     if(!is.null(metadata$csl)) warning("Please do not use custom CSL formatting, if there is an issue with the default styling please contact [email protected]")
     metadata$csl <- metadata$csl %||% system.file("rjournal.csl", package = "rjtools", mustWork = TRUE)
 
-    metadata$output <- replace_names(metadata$output, c("rjtools::rjournal_web_article" = "distill::distill_article"))
+    metadata$output <- replace_names(
+      metadata$output,
+      c(
+        "rjtools::rjournal_web_article" = "distill::distill_article",
+        "rjtools::rjournal_article" = "distill::distill_article",
+      )
+    )
 
     # Replace metadata with modified copy
     article_metadata <<- metadata

R/rj_pdf_issue.R

@@ -118,7 +118,7 @@ rjournal_pdf_issue <- function(..., render_all = FALSE) {
               callr::r(function(input){
                 rmarkdown::render(
                   input,
-                  output_format = "rjtools::rjournal_web_article"
+                  output_format = "rjtools::rjournal_article"
                 )
               }, args = list(input = art_rmd))
             }

_pkgdown.yml

@@ -16,7 +16,9 @@ reference:
 - title: R Markdown article format
   desc: Functions to build HTML and PDF R Journal articles
   contents:
+  - rjournal_article
   - rjournal_web_article
+  - rjournal_pdf_article
 - title: Prepare article submission
   desc: Functions to help building a zip file of relevant materials for submission
   contents:

inst/paper-with-errors/paper-with-errors.Rmd

@@ -23,7 +23,7 @@ author:
     - Somewhere, Australia
 type: package
 output: 
-  rjtools::rjournal_web_article
+  rjtools::rjournal_article
 bibliography: RJreferences.bib
 
 ---

inst/rmarkdown/templates/rjournal/skeleton/skeleton.Rmd

@@ -25,7 +25,7 @@ author:
     orcid: 0000-0002-0912-0225
 type: package
 output: 
-  rjtools::rjournal_web_article:
+  rjtools::rjournal_article:
     self_contained: yes
     toc: no
 bibliography: RJreferences.bib

inst/sample-article/article.Rmd

@@ -24,7 +24,7 @@ author:
     - Somewhere, Australia
 type: package
 output: 
-  rjtools::rjournal_web_article
+  rjtools::rjournal_article
 bibliography: article.bib
 ---
 

tests/bad-article/article.Rmd

@@ -24,7 +24,7 @@ author:
     - Somewhere, Australia
 type: package
 output: 
-  rjtools::rjournal_web_article
+  rjtools::rjournal_article
 bibliography: article.bib
 ---
 

vignettes/create_article.Rmd

@@ -60,7 +60,7 @@ install.packages(c("plotly", "ggplot2", "kableExtra", "palmerpenguins"))
 The R Journal uses `pandoc-citeproc` to handle the Citation Style Language (CSL) style. 
 If you're knitting the document within RStudio (which we recommend), this is automatically handled. However, if you're using the command line, you'll need to ensure the `pandoc-citeproc` extension is installed properly on your system.
 
-The `rjtools::rjournal_web_article` output specified in the article YAML will create the article in both html and pdf formats. Additional files created during the knit are (assuming file name of `quokka-bilby`):
+The `rjtools::rjournal_article` output specified in the article YAML will create the article in both html and pdf formats. Additional files created during the knit are (assuming file name of `quokka-bilby`):
 
   - **quokka-bilby.html**: the html article 
   - **quokka-bilby.pdf**: the pdf article 

vignettes/format-details.Rmd

@@ -31,7 +31,7 @@ This has these components:
 - output format lines should look like
 ```
 output:
-  rjtools::rjournal_web_article
+  rjtools::rjournal_article
 ```
 - `bibliography: RJreferences.bib`
 
@@ -205,7 +205,7 @@ Custom `css` is discouraged, because all articles should look similar. However,
 
 If you are already writing your articles using Rmarkdown, and have written your article using the `rticles::rjournal_article` style it is straightforward to make the switch to the `rjtools` styling. These are the steps that you need to follow:
 
-1. change output formats to `rjtools::rjournal_web_article` to switch to the new style, 
+1. change output formats to `rjtools::rjournal_article` to switch to the new style, 
 2. remove any latex specific functionality, 
 3. change figure, table references to `\@ref()` and 
 4. add the `rjournal.csl` and `rjournal.css` template files to your folder, updating YAML to utilise them, and 
@@ -237,7 +237,9 @@ Examples for your paper should be computed relatively quickly, which often means
 
 If you have a large file that you believe should be used for the paper, you could store the file elsewhere, on your own GitHub repo, or on a data file share service like [Figshare](https://help.figshare.com/article/guide-to-sharing-data-on-figshare-plus), and add download and handling code to your paper.
 
-# Handling slow computationsThe editorial team needs to re-build your article to check that results are reproducible, and the editor will need to re-build your article when it is organised into an issue. Try to ensure that your code runs quickly. If you need to have a code chunk that takes several minutes or more to run, consider turning the chunk off, providing an intermediate state that is loaded into the next chunk. Generally, we advise against using the `cache` feature of Rmarkdown because when multiple articles are built in the issue construction it might render your article inadequately. 
+# Handling slow computations
+
+The editorial team needs to re-build your article to check that results are reproducible, and the editor will need to re-build your article when it is organised into an issue. Try to ensure that your code runs quickly. If you need to have a code chunk that takes several minutes or more to run, consider turning the chunk off, providing an intermediate state that is loaded into the next chunk. Generally, we advise against using the `cache` feature of Rmarkdown because when multiple articles are built in the issue construction it might render your article inadequately. 
 
 # Trouble-shooting