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[AUTO] Update data #100

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merged 5 commits into from
Jul 18, 2024
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sangovae-bot
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Brief description

This is an automatically generated PR.
The following steps are all automatically performed:

  • Fetch raw data
  • Map raw data to DwC standard and save the output in ./data/processed
  • Get an overview of the changes
  • Run some tests, e.g. check the uniqueness of occurrenceID, check that all occurrences have a eventID and scientificName, check that samplingProtocol and individualCount are correctly set.

Note to the reviewer: the workflow automation is still in a development phase. Please, check the output thoroughly before merging to main. In case, improve the data fecthing fetch_data.Rmd, the mapping dwc_mapping.Rmd, both in ./src or the GitHub workflows fetch-data.yaml and mapping_and_testing.yaml in ./.github/workflows.

Files changed:
M	data/raw/vissen_en_crustacea.csv
sangovae-bot and others added 3 commits July 15, 2024 04:01
Files changed:
M	data/processed/event.csv
M	data/processed/occurrence.csv
@damianooldoni
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Thanks @sannegovaert for arranging the output. 👍 It makes the check of changes more human readable.

I have just added dplyr:: to arrange(). Once the automatic checks are done and are 🟢, please approve and merge.

@sannegovaert sannegovaert merged commit 0f2e12d into main Jul 18, 2024
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@sannegovaert sannegovaert deleted the automatic-update-2024-07-15T03-38-49Z branch July 18, 2024 09:24
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3 participants