[AUTO]Fetch data #101

	on:
	push:
	branches:
	- 'automatic**'

	name: mapping and testing

	jobs:
	mapping:
	runs-on: ${{ matrix.config.os }}

	name: ${{ matrix.config.os }} (${{ matrix.config.r }})

	strategy:
	fail-fast: false
	matrix:
	config:
	- {os: ubuntu-latest, r: 'release'}
	env:
	R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
	RSPM: ${{ matrix.config.rspm }}
	GITHUB_PAT: ${{ secrets.WORKFLOWS }}
	GITHUB_TOKEN: ${{ secrets.WORKFLOWS }}

	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Get branch name
	run: \|
	git branch --show-current
	- name: Setup R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: ${{ matrix.config.r }}
	http-user-agent: ${{ matrix.config.http-user-agent }}

	- name: Setup pandoc
	uses: r-lib/actions/setup-pandoc@v2

	- name: Install linux libraries
	run: \|
	sudo apt install libsodium-dev
	sudo apt-get install libcurl4-openssl-dev
	sudo apt-get install libgdal-dev libproj-dev
	sudo apt install libudunits2-dev

	- name: Install R packages
	run: \|
	source("src/install_packages.R")
	shell: Rscript {0}

	- name: Mapping to DwC
	run: \|
	source("src/run_dwc_mapping.R")
	shell: Rscript {0}

	- name: Commit and push changes
	uses: devops-infra/action-commit-push@master
	with:
	github_token: ${{ secrets.WORKFLOWS }}
	commit_prefix: "[AUTO]"
	commit_message: "Mapping"

	- name: Run tests
	run: \|
	source("tests/test_dwc_event_occurrence_mof.R")
	shell: Rscript {0}

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