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richardstoeckl/README.md

Hi there 👋

I am a PhD Student at the German Archaea Centre at the University of Regensburg. Here, I am mainly involved in sequencing and genome assembly, annotation, synteny, etc. analysis of prokaryotic organisms.

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  1. basecallNanopore basecallNanopore Public

    Snakemake Pipeline to automatically basecall Nanopore sequencing data with hybrid approach of simplex and duplex basecalling

    JavaScript 2

  2. QCforSeqCode QCforSeqCode Public

    Snakemake Pipeline to check the requirements for a prokaryotic assembly to be included in the SeqCode initiative

    Python 2

  3. gbouras13/hybracter gbouras13/hybracter Public

    Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.

    Python 95 8