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THIS HAS BEEN SUPERSEDED BY THE FOLLOWING TEMPLATE AND WILL NOT BE MAINTAINED FURTHER: https://github.com/snakemake-workflows/snakemake-workflow-template

cookiecutter-snakemake-workflow

Cookiecutter template for snakemake workflows with some examples and useful scripts to run on the MDC max-cluster using the SGE scheduler. An alternative profile is available for slurm.

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A cookiecutter template for Snakemake workflows

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  • Python 79.9%
  • Shell 20.1%