pinned all pip installed package versions in dockerfile

README.md

@@ -1,6 +1,6 @@
 # mesh_tools
 
-Utility functions for mesh representation objects (like trimesh) and manipulations using 3rd party packages (CGAL, Meshlab, etc.). All system requirements for 3rd party packages and python wrappers are performed in Dockerfile
+Utility functions for mesh representation objects (like trimesh) and manipulations using 3rd party packages (CGAL, Meshlab, etc.). All system requirements for 3rd party packages and python wrappers are performed in Dockerfile.
 
 ## Setup: Installation inside docker env
 
@@ -9,7 +9,7 @@ Utility functions for mesh representation objects (like trimesh) and manipulatio
 ### Download Docker Image
 
 ```bash
-docker pull celiib/mesh_tools:v4
+docker pull celiib/mesh_tools:v3
 ```
 
 ### Run Docker Container (from CLI)
@@ -20,7 +20,7 @@ mkdir notebooks
 docker container run -it \
     -p 8890:8888 \
     -v ./notebooks:/notebooks \
-    celiib/mesh_tools:v4
+    celiib/mesh_tools:v3
 ```
 
 ### Inside Docker Container Install Package

docker/Dockerfile

@@ -77,15 +77,143 @@ RUN pip3 install setuptools=='59.6.0' \
 
 
 RUN python3 -m pip --no-cache-dir install \
-    notebook==6.5.4 \
-    jupyterlab==4.0.2 \
-    jupyter_contrib_nbextensions \
-    simplejson \
-    jedi==0.17.2 \
-    ipywidgets==8.1.1 \
-    ipywebrtc \
-    jupyterlab_widgets \
-    ipyvolume==0.6.3
+    anyio==3.7.1 \ 
+    argon2-cffi==21.3.0 \ 
+    argon2-cffi-bindings==21.2.0 \ 
+    arrow==1.2.3 \ 
+    asn1crypto==0.24.0 \ 
+    asttokens==2.2.1 \ 
+    async-lru==2.0.4 \ 
+    attrs==23.1.0 \ 
+    Babel==2.12.1 \ 
+    backcall==0.2.0 \ 
+    beautifulsoup4==4.12.2 \ 
+    bleach==6.0.0 \ 
+    bqplot==0.12.40 \ 
+    certifi==2023.7.22 \ 
+    cffi==1.15.1 \ 
+    charset-normalizer==3.2.0 \ 
+    comm==0.1.4 \ 
+    contourpy==1.1.0 \ 
+    cryptography==2.1.4 \ 
+    cycler==0.11.0 \ 
+    Cython==0.29.36 \ 
+    debugpy==1.6.7.post1 \ 
+    decorator==5.1.1 \ 
+    defusedxml==0.7.1 \ 
+    exceptiongroup==1.1.2 \ 
+    executing==1.2.0 \ 
+    fastjsonschema==2.18.0 \ 
+    fonttools==4.42.0 \ 
+    fqdn==1.5.1 \ 
+    idna==3.4 \ 
+    importlib-metadata==6.8.0 \ 
+    importlib-resources==6.0.1 \ 
+    ipydatawidgets==4.3.5 \ 
+    ipykernel==6.25.1 \ 
+    ipython==8.12.2 \ 
+    ipython-genutils==0.2.0 \ 
+    ipyvolume==0.6.3 \ 
+    ipyvue==1.9.2 \ 
+    ipyvuetify==1.8.10 \ 
+    ipywebrtc==0.6.0 \ 
+    ipywidgets==8.1.0 \ 
+    isoduration==20.11.0 \ 
+    jedi==0.17.2 \ 
+    Jinja2==3.1.2 \ 
+    json5==0.9.14 \ 
+    jsonpointer==2.4 \ 
+    jsonschema==4.19.0 \ 
+    jsonschema-specifications==2023.7.1 \ 
+    jupyter-contrib-core==0.4.2 \ 
+    jupyter-contrib-nbextensions==0.7.0 \ 
+    jupyter-events==0.7.0 \ 
+    jupyter-highlight-selected-word==0.2.0 \ 
+    jupyter-lsp==2.2.0 \ 
+    jupyter-nbextensions-configurator==0.6.3 \ 
+    jupyter_client==8.3.0 \ 
+    jupyter_core==5.3.1 \ 
+    jupyter_server==2.7.0 \ 
+    jupyter_server_terminals==0.4.4 \ 
+    jupyterlab==4.0.2 \ 
+    jupyterlab-pygments==0.2.2 \ 
+    jupyterlab-widgets==3.0.8 \ 
+    jupyterlab_server==2.24.0 \ 
+    keyring==10.6.0 \ 
+    keyrings.alt==3.0 \ 
+    kiwisolver==1.4.4 \ 
+    lxml==4.9.3 \ 
+    MarkupSafe==2.1.3 \ 
+    matplotlib==3.7.2 \ 
+    matplotlib-inline==0.1.6 \ 
+    mistune==3.0.1 \ 
+    nbclassic==1.0.0 \ 
+    nbclient==0.8.0 \ 
+    nbconvert==7.7.3 \ 
+    nbformat==5.9.2 \ 
+    nest-asyncio==1.5.7 \ 
+    notebook==6.5.4 \ 
+    notebook_shim==0.2.3 \ 
+    numpy==1.24.4 \ 
+    overrides==7.4.0 \ 
+    packaging==23.1 \ 
+    pandas==2.0.3 \ 
+    pandocfilters==1.5.0 \ 
+    parso==0.7.1 \ 
+    pexpect==4.8.0 \ 
+    pickleshare==0.7.5 \ 
+    Pillow==10.0.0 \ 
+    pkgutil_resolve_name==1.3.10 \ 
+    platformdirs==3.10.0 \ 
+    prometheus-client==0.17.1 \ 
+    prompt-toolkit==3.0.39 \ 
+    psutil==5.9.5 \ 
+    ptyprocess==0.7.0 \ 
+    pure-eval==0.2.2 \ 
+    pycparser==2.21 \ 
+    pycrypto==2.6.1 \ 
+    Pygments==2.16.1 \ 
+    PyGObject==3.26.1 \ 
+    pyparsing==3.0.9 \ 
+    python-apt==1.6.6 \ 
+    python-dateutil==2.8.2 \ 
+    python-json-logger==2.0.7 \ 
+    pythreejs==2.4.2 \ 
+    pytz==2023.3 \ 
+    pyxdg==0.25 \ 
+    PyYAML==6.0.1 \ 
+    pyzmq==25.1.0 \ 
+    referencing==0.30.2 \ 
+    requests==2.31.0 \ 
+    rfc3339-validator==0.1.4 \ 
+    rfc3986-validator==0.1.1 \ 
+    rpds-py==0.9.2 \ 
+    Rtree==0.8.3 \ 
+    SecretStorage==2.3.1 \ 
+    Send2Trash==1.8.2 \ 
+    simplejson==3.19.1 \ 
+    six==1.11.0 \ 
+    sniffio==1.3.0 \ 
+    soupsieve==2.4.1 \ 
+    stack-data==0.6.2 \ 
+    terminado==0.17.1 \ 
+    tinycss2==1.2.1 \ 
+    tomli==2.0.1 \ 
+    tornado==6.3.2 \ 
+    traitlets==5.9.0 \ 
+    traittypes==0.2.1 \ 
+    typing_extensions==4.7.1 \ 
+    tzdata==2023.3 \ 
+    unattended-upgrades==0.1 \ 
+    uri-template==1.3.0 \ 
+    urllib3==2.0.4 \ 
+    wcwidth==0.2.6 \ 
+    webcolors==1.13 \ 
+    webencodings==0.5.1 \ 
+    websocket-client==1.6.1 \ 
+    widgetsnbextension==4.0.8 \ 
+    zipp==3.16.2
+
 
 RUN jupyter nbextension enable --py --sys-prefix ipyvolume \
     && jupyter nbextension enable --py --sys-prefix widgetsnbextension
@@ -109,7 +237,6 @@ RUN jupyter nbextension enable --py --sys-prefix ipyvolume \
 FROM base AS mesh_lite
 
 ADD ./python_bash_files/embree.bash /src/embree.bash
-
 RUN pip3 install cython==0.29.36
 
 RUN apt-get update && apt-get install -q -y \
@@ -119,7 +246,6 @@ RUN apt-get update && apt-get install -q -y \
     libglfw3-dev \
     && chmod +x /src/embree.bash && /src/embree.bash
 
-
 #-------------------------------------------------------------
 FROM mesh_lite AS mesh_heavy