Fix E501 F541 F841 for main, mongoclient, conftest, schemas.py

regolith/main.py

@@ -161,7 +161,7 @@ def create_parser():
     )
 
     # deploy subparser
-    depp = subp.add_parser("deploy", help="deploys what was built by regolith")
+    subp.add_parser("deploy", help="deploys what was built by regolith")
 
     # email subparser
     emlp = subp.add_parser("email", help="automates emailing")
@@ -225,9 +225,10 @@ def create_parser():
     # mongo-to-fs subparser
     mtf = subp.add_parser(
         "mongo-to-fs",
-        help="Backup database from mongodb to filesystem as json. The database will be imported to the destination "
-        "specified by the 'database':'dst_url' key. For this to work, ensure that the database is included in the "
-        "dst_url, and that local is set to true.",
+        help="Backup database from mongodb to filesystem as json. "
+             "The database will be imported to the destination specified by the 'database':'dst_url' key. "
+             "For this to work, ensure that the database is included in the "
+             "dst_url, and that local is set to true.",
     )
 
     mtf.add_argument(

regolith/mongoclient.py

@@ -196,7 +196,8 @@ def change_keys_id_and_date(obj, convert):
         Recursively goes through the dictionary obj and replaces keys with the convert function.
         """
         if isinstance(obj, datetime.date):
-            # Mongo cannot handle datetime.date format, but we have infrastructure to handle iso date strings present
+            # Mongo cannot handle datetime.date format,
+            # but we have infrastructure to handle iso date strings present
             # Do not convert to datetime.datetime. Mongo can handle this, but regolith cannot.
             return obj.isoformat()
         if isinstance(obj, (str, int, float)):
@@ -342,7 +343,8 @@ def open(self):
                 except AttributeError:
                     print(
                         "ERROR:\n"
-                        "Add a username and password to user.json in user/.config/regolith/user.json with the keys\n"
+                        "Add a username and password to user.json in "
+                        "user/.config/regolith/user.json with the keys\n"
                         "mongo_id and mongo_db_password respectively.\n\n"
                         "'uname_from_config' and 'pwd_from_config' can/should stand in for these field in the\n"
                         "mongo URL string in regolithrc.json.\n"

regolith/schemas.py

@@ -151,17 +151,8 @@ def load_schemas():
 def load_exemplars():
     here = Path(__file__).parent
     exemplar_file = here / "exemplars.json"
-    with open(exemplar_file, "r", encoding="utf-8") as exemplar_file:
-        raw_exemplars = json.load(exemplar_file)
-    exemplars = raw_exemplars
-    return exemplars
-
-
-def load_exemplars():
-    here = Path(__file__).parent
-    exemplars_file = here / "exemplars.json"
-    with open(exemplars_file, "r", encoding="utf-8") as exemplars_file:
-        exemplars = json.load(exemplars_file)
+    with open(exemplar_file, "r", encoding="utf-8") as efile:
+        exemplars = json.load(efile)
     return exemplars
 
 

tests/conftest.py

@@ -4,8 +4,7 @@
 import json
 import os
 import tempfile
-from copy import deepcopy, copy
-from unittest import mock
+from copy import deepcopy
 
 import pytest
 from pymongo import MongoClient
@@ -94,7 +93,6 @@ def make_mongodb():
     directory, as well as a mongo database.
     This will yield the path to the repo.
     """
-    cwd = os.getcwd()
     forked = False
     name = "regolith_mongo_fake"
     repo = os.path.join(tempfile.gettempdir(), name)
@@ -133,10 +131,10 @@ def make_mongodb():
             f,
         )
     if os.name == "nt":
-        # If on windows, the mongod command cannot be run with the fork or syslog options. Instead, it is installed as
-        # a service and the exceptions that would typically be log outputs are handled by the exception handlers below.
-        # In addition, the database must always be manually deleted from the windows mongo instance before running a
-        # fresh test.
+        # If on windows, the mongod command cannot be run with the fork or syslog options.
+        # Instead, it is installed as a service and the exceptions that would typically be log outputs
+        # are handled by the exception handlers below. In addition, the database must always be manually
+        # deleted from the windows mongo instance before running a fresh test.
         cmd = ["mongo", REGOLITH_MONGODB_NAME, "--eval", "db.dropDatabase()"]
         try:
             subprocess.check_call(cmd, cwd=repo)
@@ -156,8 +154,9 @@ def make_mongodb():
         subprocess.check_call(cmd, cwd=repo)
     except CalledProcessError:
         print(
-            "If using linux or mac, Mongod command failed to execute. If using windows, the status of mongo could \n"
-            "not be retrieved. In order to run mongodb tests, make sure to install the mongodb community edition with"
+            "If using linux or mac, Mongod command failed to execute. "
+            "If using windows, the status of mongo could \n not be retrieved. "
+            "In order to run mongodb tests, make sure to install the mongodb community edition with "
             "\nthe following link:\n"
             "https://docs.mongodb.com/manual/installation/"
         )
@@ -240,10 +239,10 @@ def make_mixed_db():
             f,
         )
     if os.name == "nt":
-        # If on windows, the mongod command cannot be run with the fork or syslog options. Instead, it is installed as
-        # a service and the exceptions that would typically be log outputs are handled by the exception handlers below.
-        # In addition, the database must always be manually deleted from the windows mongo instance before running a
-        # fresh test.
+        # If on windows, the mongod command cannot be run with the fork or syslog options.
+        # Instead, it is installed as a service and the exceptions that would typically be log outputs
+        # are handled by the exception handlers below. In addition, the database must always be manually
+        # deleted from the windows mongo instance before running a fresh test.
         cmd = ["mongo", REGOLITH_MONGODB_NAME, "--eval", "db.dropDatabase()"]
         try:
             subprocess.check_call(cmd, cwd=repo)
@@ -411,10 +410,10 @@ def make_migration_db(fs_to_mongo_true__mongo_to_fs_false):
             f,
         )
     if os.name == "nt":
-        # If on windows, the mongod command cannot be run with the fork or syslog options. Instead, it is installed as
-        # a service and the exceptions that would typically be log outputs are handled by the exception handlers below.
-        # In addition, the database must always be manually deleted from the windows mongo instance before running a
-        # fresh test.
+        # If on windows, the mongod command cannot be run with the fork or syslog options.
+        # Instead, it is installed as a service and the exceptions that would typically be log outputs
+        # are handled by the exception handlers below. In addition, the database must always be manually
+        # deleted from the windows mongo instance before running a fresh test.
         cmd = ["mongo", ALTERNATE_REGOLITH_MONGODB_NAME, "--eval", "db.dropDatabase()"]
         try:
             subprocess.check_call(cmd, cwd=repo)
@@ -467,8 +466,8 @@ def shut_down_fork(forked, repo):
             subprocess.check_call(cmd, cwd=repo)
         except CalledProcessError:
             print(
-                f'Deleting the test database failed, insert "mongo admin --eval '
-                f'"db.shutdownServer()"" into command line manually'
+                'Deleting the test database failed, insert "mongo admin --eval '
+                '"db.shutdownServer()"" into command line manually'
             )