Merge pull request #1138 from stevenhua0320/c15

README.rst and conf.py update

README.rst

@@ -1,8 +1,120 @@
-Regolith
+|Icon| |title|_
+===============
+
+.. |title| replace:: regolith
+.. _title: https://regro.github.io/regolith
+
+.. |Icon| image:: https://avatars.githubusercontent.com/regro
+        :target: https://regro.github.io/regolith
+        :height: 100px
+
+|PyPi| |Forge| |PythonVersion| |PR|
+
+|CI| |Codecov| |Black| |Tracking|
+
+.. |Black| image:: https://img.shields.io/badge/code_style-black-black
+        :target: https://github.com/psf/black
+
+.. |CI| image:: https://github.com/regro/regolith/actions/workflows/main.yml/badge.svg
+        :target: https://github.com/regro/regolith/actions/workflows/main.yml
+
+.. |Codecov| image:: https://codecov.io/gh/regro/regolith/branch/main/graph/badge.svg
+        :target: https://codecov.io/gh/regro/regolith
+
+.. |Forge| image:: https://img.shields.io/conda/vn/conda-forge/regolith
+        :target: https://anaconda.org/conda-forge/regolith
+
+.. |PR| image:: https://img.shields.io/badge/PR-Welcome-29ab47ff
+
+.. |PyPi| image:: https://img.shields.io/pypi/v/regolith
+        :target: https://pypi.org/project/regolith/
+
+.. |PythonVersion| image:: https://img.shields.io/pypi/pyversions/regolith
+        :target: https://pypi.org/project/regolith/
+
+.. |Tracking| image:: https://img.shields.io/badge/issue_tracking-github-blue
+        :target: https://github.com/regro/regolith/issues
+
+A Group Content Management System
+
+
+For more information about the regolith library, please consult our `online documentation <https://regro.github.io/regolith>`_.
+
+Citation
 --------
 
-Research Group Content Management System
+If you use regolith in a scientific publication, we would like you to cite this package as
+
+        regolith Package, https://github.com/regro/regolith
+
+Installation
+------------
+
+The preferred method is to use `Miniconda Python
+<https://docs.conda.io/projects/miniconda/en/latest/miniconda-install.html>`_
+and install from the "conda-forge" channel of Conda packages.
+
+To add "conda-forge" to the conda channels, run the following in a terminal. ::
+
+        conda config --add channels conda-forge
+
+We want to install our packages in a suitable conda environment.
+The following creates and activates a new environment named ``regolith_env`` ::
+
+        conda create -n regolith_env python=3
+        conda activate regolith_env
+
+Then, to fully install ``regolith`` in our active environment, run ::
+
+        conda install regolith
+
+Another option is to use ``pip`` to download and install the latest release from
+`Python Package Index <https://pypi.python.org>`_.
+To install using ``pip`` into your ``regolith_env`` environment, we will also have to install dependencies ::
+
+        pip install -r https://raw.githubusercontent.com/regro/regolith/main/requirements/run.txt
+
+and then install the package ::
+
+        pip install regolith
+
+If you prefer to install from sources, after installing the dependencies, obtain the source archive from
+`GitHub <https://github.com/regro/regolith/>`_. Once installed, ``cd`` into your ``regolith`` directory
+and run the following ::
+
+        pip install .
+
+Support and Contribute
+----------------------
+
+`Diffpy user group <https://groups.google.com/g/diffpy-users>`_ is the discussion forum for general questions and discussions about the use of regolith. Please join the regolith users community by joining the Google group. The regolith project welcomes your expertise and enthusiasm!
+
+If you see a bug or want to request a feature, please `report it as an issue <https://github.com/regro/regolith/issues>`_ and/or `submit a fix as a PR <https://github.com/regro/regolith/pulls>`_. You can also post it to the `Diffpy user group <https://groups.google.com/g/diffpy-users>`_.
+
+Feel free to fork the project and contribute. To install regolith
+in a development mode, with its sources being directly used by Python
+rather than copied to a package directory, use the following in the root
+directory ::
+
+        pip install -e .
+
+To ensure code quality and to prevent accidental commits into the default branch, please set up the use of our pre-commit
+hooks.
+
+1. Install pre-commit in your working environment by running ``conda install pre-commit``.
+
+2. Initialize pre-commit (one time only) ``pre-commit install``.
+
+Thereafter your code will be linted by black and isort and checked against flake8 before you can commit.
+If it fails by black or isort, just rerun and it should pass (black and isort will modify the files so should
+pass after they are modified). If the flake8 test fails please see the error messages and fix them manually before
+trying to commit again.
+
+Improvements and fixes are always appreciated.
+
+Before contribuing, please read our `Code of Conduct <https://github.com/regro/regolith/blob/main/CODE_OF_CONDUCT.rst>`_.
+
+Contact
+-------
 
-Docs:
------
-https://regro.github.io/regolith-docs/
+For more information on regolith please visit the project `web-page <https://github.com/regro/regolith>`_ or email Prof. Simon Billinge at [email protected].

doc/source/conf.py

@@ -19,11 +19,16 @@
 
 import cloud_sptheme as csp
 
+import regolith
 from regolith import __version__ as REGOLITH_VERSION
 from regolith.fsclient import _id_key, dump_json, json_to_yaml
 from regolith.main import CONNECTED_COMMANDS, DISCONNECTED_COMMANDS
 from regolith.schemas import EXEMPLARS, SCHEMAS
 
+autodoc_mock_imports = [
+    regolith,
+]
+
 # If extensions (or modules to document with autodoc) are in another directory,
 # add these directories to sys.path here. If the directory is relative to the
 # documentation root, use os.path.abspath to make it absolute, like shown here.
@@ -113,7 +118,7 @@
 
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
-html_theme = "redcloud"
+html_theme = "sphinx_rtd_theme"
 # html_theme = 'blackcloud'
 
 # Theme options are theme-specific and customize the look and feel of a theme

src/regolith/schemas.json

@@ -2877,6 +2877,7 @@
         }
     },
     "software": {
+        "_description": {"description": "Information about software, such as active, grants, etc."},
         "_id": {
             "description": "package id",
             "required": true,