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Update README.md
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Removed outdated "todo"
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nathanlazar authored Nov 18, 2023
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Expand Up @@ -22,6 +22,3 @@ Notebooks to reproduce plots from public datasets are included in the `notebooks
- `DepMap_PB_Drivers.ipynb` - Use DepMap 22Q4 data to look at differential proximity bias when TP53 and other genes are wild-type vs loss/gain of function.
- `DepMap_version_comparisons.ipynb` - Generate whole-genome plots and Brunner-Munzel probability plots for DepMap 19Q3, 22Q4 and 23Q2 data.
- `scPerturb_tables_heatmaps.ipynb` - Load scRNASeq datasets from scPerturb, run infercnv, compute chromosomal loss, generate result tables, and plot infercnv heatmaps for cells with specific loss.

# TODO:
- Code to search DepMap for drivers of proximity bias

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