build(docker): upgraded docker image to ubuntu 24.04 (#270)

reanahub · Jul 16, 2024 · 6e7ab9d · 6e7ab9d
1 parent 95341c8
commit 6e7ab9d
Show file tree

Hide file tree

Showing 7 changed files with 63 additions and 62 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -10,7 +10,7 @@ on: [push, pull_request]
 
 jobs:
   lint-commitlint:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -36,7 +36,7 @@ jobs:
           ./run-tests.sh --check-commitlint ${{ github.event.pull_request.head.sha }}~${{ github.event.pull_request.commits }} ${{ github.event.pull_request.head.sha }} ${{ github.event.pull_request.number }}
 
   lint-shellcheck:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -47,15 +47,15 @@ jobs:
           ./run-tests.sh --check-shellcheck
 
   lint-black:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.8
+          python-version: "3.12"
 
       - name: Check Python code formatting
         run: |
@@ -64,15 +64,15 @@ jobs:
           ./run-tests.sh --check-black
 
   lint-flake8:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.8
+          python-version: "3.12"
 
       - name: Check compliance with pep8, pyflakes and circular complexity
         run: |
@@ -81,15 +81,15 @@ jobs:
           ./run-tests.sh --check-flake8
 
   lint-pydocstyle:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.8
+          python-version: "3.12"
 
       - name: Check compliance with Python docstring conventions
         run: |
@@ -98,15 +98,15 @@ jobs:
           ./run-tests.sh --check-pydocstyle
 
   lint-check-manifest:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.8
+          python-version: "3.12"
 
       - name: Check Python manifest completeness
         run: |
@@ -115,15 +115,15 @@ jobs:
           ./run-tests.sh --check-manifest
 
   docs-sphinx:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.8
+          python-version: "3.12"
 
       - name: Install system dependencies
         run: |
@@ -139,15 +139,15 @@ jobs:
         run: ./run-tests.sh --check-sphinx
 
   python-tests:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.8
+          python-version: "3.12"
 
       - name: Install system dependencies
         run: |
@@ -170,7 +170,7 @@ jobs:
           files: coverage.xml
 
   lint-dockerfile:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -179,7 +179,7 @@ jobs:
         run: ./run-tests.sh --check-dockerfile
 
   docker-build:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -188,7 +188,7 @@ jobs:
         run: ./run-tests.sh --check-docker-build
 
   release-docker:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     if: >
       vars.RELEASE_DOCKER == 'true' &&
       github.event_name == 'push' &&

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
@@ -7,9 +7,9 @@
 version: 2
 
 build:
-  os: ubuntu-22.04
+  os: ubuntu-24.04
   tools:
-    python: "3.8"
+    python: "3.12"
 
 sphinx:
   configuration: docs/conf.py

diff --git a/AUTHORS.md b/AUTHORS.md
@@ -17,5 +17,6 @@ The list of contributors in alphabetical order:
 - [Parth Shandilya](https://github.com/ParthS007)
 - [Rokas Maciulaitis](https://orcid.org/0000-0003-1064-6967)
 - [Sinclert Pérez](https://www.linkedin.com/in/sinclert)
+- [Stavros Moiras](https://orcid.org/0009-0005-4331-096X)
 - [Tibor Simko](https://orcid.org/0000-0001-7202-5803)
 - [Vladyslav Moisieienkov](https://orcid.org/0000-0001-9717-0775)
diff --git a/Dockerfile b/Dockerfile
@@ -1,23 +1,24 @@
 # This file is part of REANA.
-# Copyright (C) 2017, 2018, 2019, 2020, 2021, 2022, 2023 CERN.
+# Copyright (C) 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024 CERN.
 #
 # REANA is free software; you can redistribute it and/or modify it
 # under the terms of the MIT License; see LICENSE file for more details.
 
 # Use Ubuntu LTS base image
-FROM docker.io/library/ubuntu:20.04
+FROM docker.io/library/ubuntu:24.04
 
 # Use default answers in installation commands
 ENV DEBIAN_FRONTEND=noninteractive
 
-# Use distutils provided by the standard Python library instead of the vendored one in
-# setuptools, so that editable installations are stored in the right directory.
-# See https://github.com/pypa/setuptools/issues/3301
-ENV SETUPTOOLS_USE_DISTUTILS=stdlib
+# Allow pip to install packages in the system site-packages dir
+ENV PIP_BREAK_SYSTEM_PACKAGES=true
 
 # Prepare list of Python dependencies
 COPY requirements.txt /code/
 
+WORKDIR /code
+COPY . /code
+
 # Install all system and Python dependencies in one go
 # hadolint ignore=DL3008,DL3013
 RUN apt-get update -y && \
@@ -32,12 +33,13 @@ RUN apt-get update -y && \
       libtool \
       make \
       openssl \
-      python3.8 \
-      python3.8-dev \
+      python3.12 \
+      python3.12-dev \
       python3-pip \
       unzip \
       vim-tiny && \
-    pip install --no-cache-dir --upgrade pip setuptools && \
+    pip install --no-cache-dir "modules/reana-commons[yadage]" --upgrade && \
+    pip install --no-cache-dir --upgrade setuptools && \
     pip install --no-cache-dir -r /code/requirements.txt && \
     apt-get remove -y \
       autoconf \
@@ -47,14 +49,14 @@ RUN apt-get update -y && \
       libffi-dev \
       libtool \
       make \
-      python3.8-dev && \
+      python3.12-dev && \
     apt-get autoremove -y && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 
 # Copy cluster component source code
-WORKDIR /code
-COPY . /code
+
+
 
 # Are we debugging?
 ARG DEBUG=0

diff --git a/requirements.in b/requirements.in
@@ -4,7 +4,7 @@
 # REANA is free software; you can redistribute it and/or modify it
 # under the terms of the MIT License; see LICENSE file for more details.
 
-jq==0.1.7; platform_machine == "x86_64"
+jq==1.7.0; platform_machine == "x86_64"
 jq==1.4.1; platform_machine == "aarch4"
-jq==1.4.1; platform_machine == "arm64"
+jq==1.7.0; platform_machine == "arm64"
 pygraphviz==1.8
diff --git a/requirements.txt b/requirements.txt
@@ -1,63 +1,61 @@
 #
-# This file is autogenerated by pip-compile with Python 3.8
+# This file is autogenerated by pip-compile with Python 3.12
 # by the following command:
 #
-#    pip-compile --annotation-style=line --output-file=requirements.txt requirements.in setup.py
+#    pip-compile --annotation-style=line --output-file=requirements.txt setup.py
 #
-adage==0.10.1             # via reana-commons, reana-workflow-engine-yadage (setup.py), yadage
+adage==0.11.0             # via reana-commons, reana-workflow-engine-yadage (setup.py), yadage
 amqp==5.2.0               # via kombu
 appdirs==1.4.4            # via fs
 attrs==23.2.0             # via jsonschema
-backports-zoneinfo[tzdata]==0.2.1  # via backports-zoneinfo, kombu
 bracex==2.4               # via wcmatch
 bravado==10.3.2           # via reana-commons
 bravado-core==6.1.0       # via bravado, reana-commons
-certifi==2024.2.2         # via requests
+certifi==2024.7.4         # via requests
 charset-normalizer==3.3.2  # via requests
 checksumdir==1.1.9        # via packtivity, reana-commons, yadage
 click==8.1.7              # via packtivity, reana-commons, yadage, yadage-schemas
 decorator==5.1.1          # via jsonpath-rw, networkx
 fs==2.4.16                # via reana-commons
 glob2==0.7                # via packtivity, yadage
-graphviz==0.20.1          # via reana-workflow-engine-yadage (setup.py)
-idna==3.6                 # via jsonschema, requests
-jq==0.1.7 ; platform_machine == "x86_64"  # via -r requirements.in, packtivity, yadage
+graphviz==0.20.3          # via reana-workflow-engine-yadage (setup.py)
+idna==3.7                 # via jsonschema, requests
+importlib-resources==6.4.0  # via swagger-spec-validator
+jq==1.7.0                 # via packtivity, yadage
 jsonpath-rw==1.4.0        # via packtivity, yadage
-jsonpointer==2.4          # via jsonschema, packtivity, yadage
+jsonpointer==3.0.0        # via jsonschema, packtivity, yadage
 jsonref==1.1.0            # via bravado-core, packtivity, yadage, yadage-schemas
 jsonschema[format]==3.2.0  # via bravado-core, packtivity, reana-commons, swagger-spec-validator, yadage, yadage-schemas
-kombu==5.3.5              # via reana-commons
+kombu==5.3.7              # via reana-commons
 markupsafe==2.1.5         # via werkzeug
 mock==3.0.5               # via packtivity, reana-commons
 monotonic==1.6            # via bravado
-msgpack==1.0.7            # via bravado-core
+msgpack==1.0.8            # via bravado-core
 msgpack-python==0.5.6     # via bravado
-networkx==1.11            # via adage
-packtivity==0.14.24       # via reana-workflow-engine-yadage (setup.py), yadage
+networkx==2.5            # via adage
+packtivity==0.16.2       # via reana-workflow-engine-yadage (setup.py), yadage
 ply==3.11                 # via jsonpath-rw
-psutil==5.9.8             # via yadage
+psutil==6.0.0             # via yadage
 pydot==2.0.0              # via reana-workflow-engine-yadage (setup.py)
 pydotplus==2.0.2          # via reana-workflow-engine-yadage (setup.py)
-pygraphviz==1.8           # via -r requirements.in
-pyparsing==3.1.1          # via pydot, pydotplus
+pyparsing==3.1.2          # via pydot, pydotplus
 pyrsistent==0.20.0        # via jsonschema
-python-dateutil==2.9.0    # via bravado, bravado-core
+python-dateutil==2.9.0.post0  # via bravado, bravado-core
 pytz==2024.1              # via bravado-core
 pyyaml==6.0.1             # via bravado, bravado-core, packtivity, reana-commons, swagger-spec-validator, yadage, yadage-schemas
-reana-commons[yadage]==0.95.0a2	# via reana-workflow-engine-yadage (setup.py)
-requests[security]==2.31.0  # via bravado, bravado-core, packtivity, reana-workflow-engine-yadage (setup.py), yadage, yadage-schemas
+reana-commons[yadage]==0.95.0a2  # via reana-workflow-engine-yadage (setup.py)
+requests[security]==2.32.3  # via bravado, bravado-core, packtivity, reana-workflow-engine-yadage (setup.py), yadage, yadage-schemas
 rfc3987==1.3.8            # via jsonschema, reana-workflow-engine-yadage (setup.py)
 simplejson==3.19.2        # via bravado, bravado-core
 six==1.16.0               # via bravado, bravado-core, fs, jsonpath-rw, jsonschema, mock, python-dateutil
 strict-rfc3339==0.7       # via jsonschema
-swagger-spec-validator==3.0.3  # via bravado-core
-typing-extensions==4.10.0  # via bravado, kombu, swagger-spec-validator
-tzdata==2024.1            # via backports-zoneinfo
-urllib3==2.2.1            # via requests
+swagger-spec-validator==3.0.4  # via bravado-core
+typing-extensions==4.12.2  # via bravado, swagger-spec-validator
+urllib3==2.2.2            # via requests
 vine==5.1.0               # via amqp, kombu
 wcmatch==8.4.1            # via reana-commons
-webcolors==1.13           # via jsonschema
-werkzeug==3.0.1           # via reana-commons
+webcolors==24.6.0         # via jsonschema
+werkzeug==3.0.3           # via reana-commons
 yadage==0.20.1            # via reana-commons, reana-workflow-engine-yadage (setup.py)
 yadage-schemas==0.10.6    # via packtivity, reana-commons, reana-workflow-engine-yadage (setup.py), yadage
 

diff --git a/setup.py b/setup.py
@@ -36,9 +36,9 @@
     "tests": tests_require,
     # Using older jq on amd64 due to https://github.com/reanahub/reana-demo-bsm-search/issues/21
     "jq": [
-        "jq==0.1.7; platform_machine == 'x86_64'",
+        "jq==1.7.0; platform_machine == 'x86_64'",
         "jq==1.4.1; platform_machine == 'aarch4'",
-        "jq==1.4.1; platform_machine == 'arm64'",
+        "jq==1.7.0; platform_machine == 'arm64'",
     ],
     "pygraphviz": [
         "pygraphviz>=1.5",
@@ -62,8 +62,8 @@
     "pydotplus>=2.0.2",  # FIXME needed only if yadage visuale=True.
     # Pinning adage/packtivity/yadage/yadage-schemas to make sure we use compatible versions.
     # See https://github.com/reanahub/reana-workflow-engine-yadage/pull/236#discussion_r992475484
-    "adage==0.10.1",
-    "packtivity==0.14.24",
+    "adage==0.11.0",
+    "packtivity==0.16.2",
     "yadage==0.20.1",
     "yadage-schemas==0.10.6",
     "reana-commons[yadage]>=0.95.0a2,<0.96.0",