chore(tests): add gherkin test files to reana specifications (#73) #166
Workflow file for this run
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| # This file is part of REANA. | |
| # Copyright (C) 2020, 2021, 2023, 2024 CERN. | |
| # | |
| # REANA is free software; you can redistribute it and/or modify it | |
| # under the terms of the MIT License; see LICENSE file for more details. | |
| name: CI | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '0 7 * * 1' | |
| jobs: | |
| lint-commitlint: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Node | |
| uses: actions/setup-node@v4 | |
| - name: Install commitlint | |
| run: | | |
| npm install conventional-changelog-conventionalcommits | |
| npm install commitlint@latest | |
| - name: Check commit message compliance of the recently pushed commit | |
| if: github.event_name == 'push' | |
| run: | | |
| ./run-tests.sh --check-commitlint HEAD~1 HEAD | |
| - name: Check commit message compliance of the pull request | |
| if: github.event_name == 'pull_request' | |
| run: | | |
| ./run-tests.sh --check-commitlint ${{ github.event.pull_request.base.sha }} ${{ github.event.pull_request.head.sha }} ${{ github.event.pull_request.number }} | |
| lint-shellcheck: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Runs shell script static analysis | |
| run: | | |
| sudo apt-get install shellcheck | |
| ./run-tests.sh --check-shellcheck | |
| cwl-validate: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Validate CWL spec | |
| uses: reanahub/reana-github-actions/local-validate@v1 | |
| with: | |
| reana_specs: reana-cwl*.yaml | |
| cwl-local-run: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Run CWL locally | |
| uses: reanahub/reana-github-actions/local-run@v1 | |
| with: | |
| commands: | | |
| rm -rf cwl-local-run && mkdir -p cwl-local-run && cd cwl-local-run | |
| pip install cwltool | |
| cp -a ../code . && cp ../workflow/cwl/input.yml . | |
| cwltool --quiet --outdir="./results" ../workflow/cwl/workflow.cwl input.yml | |
| ls -l `pwd`/results/plot.png | |
| cd .. && rm -rf cwl-local-run | |
| serial-validate: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Validate serial spec | |
| uses: reanahub/reana-github-actions/local-validate@v1 | |
| with: | |
| reana_specs: reana.yaml reana-htcondorcern.yaml reana-slurmcern.yaml | |
| serial-local-run: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Run Serial locally | |
| uses: reanahub/reana-github-actions/local-run@v1 | |
| with: | |
| commands: | | |
| docker run -i --rm -v `pwd`:/workdir docker.io/reanahub/reana-env-root6 bash -c " | |
| cd /workdir && | |
| mkdir -p ./results && | |
| root -b -q './code/gendata.C(20000,\"./results/data.root\")'" | |
| ls -l `pwd`/results/data.root | |
| docker run -i --rm -v `pwd`:/workdir docker.io/reanahub/reana-env-root6 bash -c " | |
| cd /workdir && | |
| root -b -q './code/fitdata.C(\"./results/data.root\",\"./results/plot.png\")'" | |
| ls -l `pwd`/results/plot.png | |
| snakemake-validate: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Validate Snakemake spec | |
| uses: reanahub/reana-github-actions/local-validate@v1 | |
| with: | |
| reana_specs: reana-snakemake*.yaml | |
| snakemake-local-run: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Run Snakemake locally | |
| uses: reanahub/reana-github-actions/local-run@v1 | |
| with: | |
| commands: | | |
| # Install ROOT dependencies | |
| sudo apt-get update -y | |
| sudo apt-get install binutils cmake dpkg-dev g++ gcc libssl-dev git libx11-dev libxext-dev libxft-dev libxpm-dev python3 libtbb-dev libvdt-dev libgif-dev | |
| # Install ROOT | |
| # ROOT is needed as Snakemake does not run the workflow steps in containers | |
| wget https://root.cern/download/root_v6.32.04.Linux-ubuntu24.04-x86_64-gcc13.2.tar.gz | |
| tar -xzvf root_v6.32.04.Linux-ubuntu24.04-x86_64-gcc13.2.tar.gz | |
| source root/bin/thisroot.sh | |
| rm -rf snakemake-local-run && mkdir -p snakemake-local-run && cd snakemake-local-run | |
| pip install 'pulp<2.8' snakemake | |
| cp -a ../code . | |
| snakemake -s ../workflow/snakemake/Snakefile --configfile ../workflow/snakemake/inputs.yaml -p --cores 1 | |
| ls -l `pwd`/results/plot.png | |
| cd .. && rm -rf snakemake-local-run | |
| yadage-validate: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Validate Yadage spec | |
| uses: reanahub/reana-github-actions/local-validate@v1 | |
| with: | |
| reana_specs: reana-yadage*.yaml | |
| yadage-local-run: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Run Yadage locally | |
| uses: reanahub/reana-github-actions/local-run@v1 | |
| with: | |
| commands: | | |
| rm -rf yadage-local-run/yadage-inputs && mkdir -p yadage-local-run/yadage-inputs && cd yadage-local-run | |
| pip install yadage | |
| cp -a ../code yadage-inputs | |
| yadage-run . ../workflow/yadage/workflow.yaml -p events=20000 -p gendata=code/gendata.C -p fitdata=code/fitdata.C -d initdir=`pwd`/yadage-inputs | |
| ls -l `pwd`/fitdata/plot.png | |
| cd .. && rm -rf yadage-local-run |