GitHub - raspbian-packages/htslib

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 28 Commits
cram		cram
debian		debian
htslib		htslib
test		test
INSTALL		INSTALL
LICENSE		LICENSE
Makefile		Makefile
NEWS		NEWS
README		README
bgzf.c		bgzf.c
bgzip.c		bgzip.c
config.h.in		config.h.in
config.mk.in		config.mk.in
configure.ac		configure.ac
faidx.5		faidx.5
faidx.c		faidx.c
hfile.c		hfile.c
hfile_internal.h		hfile_internal.h
hfile_irods.c		hfile_irods.c
hfile_libcurl.c		hfile_libcurl.c
hfile_net.c		hfile_net.c
hts.c		hts.c
hts_internal.h		hts_internal.h
htsfile.1		htsfile.1
htsfile.c		htsfile.c
htslib.mk		htslib.mk
htslib.pc.in		htslib.pc.in
htslib_vars.mk		htslib_vars.mk
kfunc.c		kfunc.c
knetfile.c		knetfile.c
kstring.c		kstring.c
md5.c		md5.c
plugin.c		plugin.c
regidx.c		regidx.c
sam.5		sam.5
sam.c		sam.c
synced_bcf_reader.c		synced_bcf_reader.c
tabix.1		tabix.1
tabix.c		tabix.c
tbx.c		tbx.c
vcf.5		vcf.5
vcf.c		vcf.c
vcf_sweep.c		vcf_sweep.c
vcfutils.c		vcfutils.c

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HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data.  It is the core library used by samtools and bcftools.

See INSTALL for building and installation instructions.