Use numeric_only=True in DataFrame.corr() and cov() (#393)

* Add numeric_only=True to DataFrame.cov() and .corr() * Update notebooks
raphaelvallat · Nov 13, 2023 · fdb3c60 · fdb3c60
1 parent b8231f5
commit fdb3c60
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Showing 12 changed files with 357 additions and 94 deletions.
diff --git a/notebooks/00_QuickStart.ipynb b/notebooks/00_QuickStart.ipynb
@@ -940,6 +940,14 @@
    "execution_count": 11,
    "metadata": {},
    "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/Users/raphael/GitHub/pingouin/pingouin/correlation.py:1116: FutureWarning: DataFrame.applymap has been deprecated. Use DataFrame.map instead.\n",
+      "  mat_upper = mat_upper.applymap(replace_pval)\n"
+     ]
+    },
     {
      "data": {
       "text/html": [
@@ -1017,6 +1025,14 @@
    "execution_count": 12,
    "metadata": {},
    "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/Users/raphael/GitHub/pingouin/pingouin/pairwise.py:763: FutureWarning: DataFrame.applymap has been deprecated. Use DataFrame.map instead.\n",
+      "  mat_upper = mat_upper.applymap(lambda x: ffp(x, precision=decimals))\n"
+     ]
+    },
     {
      "data": {
       "text/html": [
@@ -1314,7 +1330,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 16,
+   "execution_count": 15,
    "metadata": {},
    "outputs": [
     {
@@ -1357,7 +1373,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 17,
+   "execution_count": 16,
    "metadata": {},
    "outputs": [
     {
@@ -1386,7 +1402,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 18,
+   "execution_count": 17,
    "metadata": {},
    "outputs": [
     {
@@ -1494,7 +1510,7 @@
        "5              neyman  -2.000  27.458  1.0  1.605e-07   0.301  0.999"
       ]
      },
-     "execution_count": 18,
+     "execution_count": 17,
      "metadata": {},
      "output_type": "execute_result"
     }

diff --git a/notebooks/01_ANOVA.ipynb b/notebooks/01_ANOVA.ipynb
diff --git a/notebooks/02_BayesianTTests.ipynb b/notebooks/02_BayesianTTests.ipynb
@@ -215,7 +215,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -229,7 +229,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.3"
+   "version": "3.9.6"
   }
  },
  "nbformat": 4,

diff --git a/notebooks/03_EffectSizes.ipynb b/notebooks/03_EffectSizes.ipynb