tic-db #1582
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## tic GitHub Actions template: linux | |
## revision date: 2021-06-27 | |
# [Custom header] | |
on: | |
workflow_dispatch: | |
push: | |
branches: | |
- master | |
pull_request: | |
# for now, CRON jobs only run on the default branch of the repo (i.e. usually on master) | |
schedule: | |
# * is a special character in YAML so you have to quote this string | |
- cron: "0 4 * * *" | |
name: tic-db | |
jobs: | |
all: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
# use a different tic template type if you do not want to build on all listed platforms | |
- { os: ubuntu-latest, r: "release" } | |
services: | |
postgres: | |
image: kartoza/postgis | |
ports: | |
- 5432:5432 | |
env: | |
# otherwise remotes::fun() errors cause the build to fail. Example: Unavailability of binaries | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
CRAN: ${{ matrix.config.cran }} | |
# make sure to run `tic::use_ghactions_deploy()` to set up deployment | |
TIC_DEPLOY_KEY: ${{ secrets.TIC_DEPLOY_KEY }} | |
# prevent rgl issues because no X11 display is available | |
RGL_USE_NULL: true | |
# if you use bookdown or blogdown, replace "PKGDOWN" by the respective | |
# capitalized term. This also might need to be done in tic.R | |
BUILD_PKGDOWN: ${{ matrix.config.pkgdown }} | |
# macOS >= 10.15.4 linking | |
SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk | |
# use GITHUB_TOKEN from GitHub to workaround rate limits in {remotes} | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
Ncpus: 4 | |
# LaTeX. Installation time: | |
# Linux: ~ 1 min | |
# macOS: ~ 1 min 30s | |
# Windows: never finishes | |
- uses: r-lib/actions/setup-tinytex@v2 | |
if: matrix.config.latex == 'true' | |
- uses: r-lib/actions/setup-pandoc@v2 | |
# set date/week for use in cache creation | |
# https://github.community/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970 | |
# - cache R packages daily | |
# - name: "[Cache] Prepare daily timestamp for cache" | |
# if: runner.os != 'Windows' | |
# id: date | |
# run: echo "::set-output name=date::$(date '+%d-%m')" | |
# - name: "[Cache] Cache R packages" | |
# if: runner.os != 'Windows' | |
# uses: pat-s/always-upload-cache@v2 | |
# with: | |
# path: ${{ env.R_LIBS_USER }} | |
# key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | |
# restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | |
- name: "[Stage] [Linux] Install required system libs" | |
if: runner.os == 'Linux' | |
run: sudo apt install libcurl4-openssl-dev libgit2-dev | |
# for some strange Windows reason this step and the next one need to be decoupled | |
- name: "[Stage] Prepare" | |
run: | | |
Rscript -e "if (!requireNamespace('remotes')) install.packages('remotes', type = 'source')" | |
Rscript -e "if (getRversion() < '3.2' && !requireNamespace('curl')) install.packages('curl', type = 'source')" | |
- name: "[Custom block] [Linux] Install spatial libraries" | |
if: runner.os == 'Linux' | |
run: sudo apt-get install libgdal-dev libproj-dev libgeos-dev libudunits2-dev | |
- name: "[Custom block] [macOS] Install spatial libraries" | |
if: runner.os == 'macOS' | |
run: | | |
# conflicts with gfortran from r-lib/actions when linking gcc | |
rm '/usr/local/bin/gfortran' | |
brew install pkg-config gdal proj geos | |
- name: "[Stage] [macOS] Install libgit2" | |
if: runner.os == 'macOS' | |
run: brew install libgit2 | |
- name: "[Stage] [macOS] Install system libs for pkgdown" | |
if: runner.os == 'macOS' && matrix.config.pkgdown != '' | |
run: brew install harfbuzz fribidi | |
- name: "[Stage] [Linux] Install system libs for pkgdown" | |
if: runner.os == 'Linux' && matrix.config.pkgdown != '' | |
run: sudo apt install libharfbuzz-dev libfribidi-dev | |
# Try to automatically check for system dependencies and install them | |
# Note: this might not catch all required system libs and manual action might be needed | |
- name: "[Stage] [Linux] Install linux system dependencies" | |
if: runner.os == 'Linux' | |
run: | | |
while read -r cmd | |
do | |
eval sudo $cmd | |
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
- name: "[Stage] Install" | |
if: matrix.config.os != 'macOS-latest' || matrix.config.r != 'devel' | |
run: Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()" | |
# macOS devel needs its own stage because we need to work with an option to suppress the usage of binaries | |
- name: "[Stage] Prepare & Install (macOS-devel)" | |
if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'devel' | |
run: | | |
echo -e 'options(Ncpus = 4, pkgType = "source", repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile | |
Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()" | |
- name: "[Stage] Script" | |
run: Rscript -e 'tic::script()' | |
- name: "[Stage] After Success" | |
if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release' | |
run: Rscript -e "tic::after_success()" | |
- name: "[Stage] Upload R CMD check artifacts" | |
if: failure() | |
uses: actions/upload-artifact@v2 | |
with: | |
name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
path: check |