Open Problems in Single-Cell Analysis

Formalizing and benchmarking open problems in single-cell genomics.

Visit the Open Problems Website.

For contributing guidelines, see CONTRIBUTING.md.

The team

Core:

• Scott Gigante (@scottgigante)
• Daniel Burkhardt (@dburkhardt)
• Malte Luecken (@LuckyMD)
• Angela Pisco (@aopisco)
• Olga Botvinnik (@olgabot)

Task authors (alphabetically):

• Mohammad Lotfallahi (@M0hammadL) - Label projection task
• Qian Qin (@qinqian) - Predicting gene expression from chromatin accessibility
• Michael Vinyard (@mvinyard) - Stress preservation in Dimensionality Reduction
• Florian Wagner (@flo-compbio) - Data denoising

Supervision (alphabetically):

• Smita Krishnaswamy, Yale
• Fabian Theis, Helmholtz Munich

Chan Zuckerberg Initiative Support (alphabetically):

• Jonah Cool
• Fiona Griffin