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Editing registered metadata to add confounding variables #642
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Dear @oquendoM , thank you for your request! The feature is actually already scheduled in the current development sprint and the first draft hopefully soon ready to show. |
This issue is stale because it has been open for 30 days with no activity. |
Depends on #680, since it would enable us to let the user provide additional columns for confounding variables. |
This issue is stale because it has been open for 30 days with no activity. |
We decided to move the concept of sample batches into the confounding variables. |
Samples within one experiment share experimental and confounding variables even if there is no value for some samples. |
For context: The confounding variables may later be used for analysis. By filtering data for samples with certain criteria in confounding variables, effects of these variables on the results are investigated. |
…etadata-to-add-confounding-variables # Conflicts: # user-interface/src/main/bundles/dev.bundle
…etadata-to-add-confounding-variables
…etadata-to-add-confounding-variables
…etadata-to-add-confounding-variables # Conflicts: # user-interface/src/main/bundles/dev.bundle
This issue is stale because it has been open for 30 days with no activity. |
…etadata-to-add-confounding-variables
Is your feature request related to a problem? Please describe.
I would like to be able to add confounding variables to already registered samples.
Describe the solution you'd like
After registration of a batch, it would be nice to be able to add confounding variables (ex. age, sex, BMI, cell culture medium, etc.) when editing the metadata of the batch.
Describe alternatives you've considered
At the moment the information can only be added as a comment, but it would be better to have it as a separate column. The new columns could be added through the browser editing function or, if not possible, by downloading the metadata as txt and uploading it with the additional columns.
Based on personal discussions with @oquendoM @Shraddha0903 and @FraBarSol we conclude some facts and properties for confounding variables in the application:
In the case of an incomplete annotation of samples, warn the user but not block the annotation process. It might be, that there are missing values and the user is aware of it.
The use case
"As a researcher, I want to annotate samples with confounding variables and their value for samples in a batch."
Requirements
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