address further sonarcloud issues

project-management/src/main/java/life/qbic/projectmanagement/domain/model/confounding/jpa/ConfoundingVariableData.java

@@ -9,12 +9,9 @@
 import java.util.Objects;
 
 /**
- * TODO!
- * <b>short description</b>
+ * Data describing a confounding variable in the database
  *
- * <p>detailed description</p>
- *
- * @since <version tag>
+ * @since 1.8.0
  */
 @Entity
 @Table(name = "experiments_datamanager_confounding_variables")

project-management/src/main/java/life/qbic/projectmanagement/domain/model/confounding/jpa/ConfoundingVariableLevelData.java

@@ -8,12 +8,9 @@
 import jakarta.persistence.Table;
 
 /**
- * TODO!
- * <b>short description</b>
+ * Data describing a confounding variable level in the database
  *
- * <p>detailed description</p>
- *
- * @since <version tag>
+ * @since 1.8.0
  */
 @Entity
 @Table(name = "confounding_variable_levels")

project-management/src/main/java/life/qbic/projectmanagement/domain/repository/ConfoundingVariableLevelRepository.java

@@ -6,12 +6,9 @@
 import org.springframework.security.access.prepost.PreAuthorize;
 
 /**
- * TODO!
- * <b>short description</b>
+ * The repository of confounding variable levels
  *
- * <p>detailed description</p>
- *
- * @since <version tag>
+ * @since 1.8.0
  */
 public interface ConfoundingVariableLevelRepository {
 

project-management/src/main/java/life/qbic/projectmanagement/domain/repository/ConfoundingVariableRepository.java

@@ -7,12 +7,9 @@
 import org.springframework.security.access.prepost.PreAuthorize;
 
 /**
- * TODO!
- * <b>short description</b>
+ * The repository of confounding variables
  *
- * <p>detailed description</p>
- *
- * @since <version tag>
+ * @since 1.8.0
  */
 public interface ConfoundingVariableRepository {
 

user-interface/src/main/java/life/qbic/datamanager/parser/MetadataConverter.java

@@ -5,9 +5,7 @@
 import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.Collection;
-import java.util.HashMap;
 import java.util.List;
-import java.util.Map;
 import java.util.Objects;
 import java.util.Set;
 import java.util.function.Function;
@@ -49,39 +47,6 @@ public static MetadataConverter measurementConverter() {
     return new MetadataConverter();
   }
 
-  /**
-   * Generates a hit map, storing the number of matches of a defined set of String values (hit
-   * values), in a target of interest collection of String values.
-   * <p>
-   * The resulting map will contain the number of occurrences of every value in the hit values
-   * collection found in the target collection to investigate.
-   *
-   * @param target    the collection of interest to search in
-   * @param hitValues a set of distinct values, that should be represented in the hit result map
-   * @return a hit result map, containing the number of occurrences of every hit value in the target
-   * String collection (0, if no target was found for a value).
-   * @since 1.4.0
-   */
-  private static Map<String, Integer> countHits(Collection<String> target, Set<String> hitValues,
-      String... ignoredProperties) {
-    Map<String, Integer> hits = new HashMap<>();
-    for (String t : hitValues) {
-      hits.put(t, 0);
-    }
-    for (String s : target) {
-      if (hitValues.contains(s)) {
-        var currentHit = hits.get(s);
-        hits.put(s, ++currentHit);
-      }
-    }
-    for (String ignoredProperty : ignoredProperties) {
-      if (hits.containsKey((ignoredProperty))) {
-        hits.remove(ignoredProperty);
-      }
-    }
-    return hits;
-  }
-
   @Override
   public List<MeasurementMetadata> convertRegister(ParsingResult parsingResult)
       throws UnknownMetadataTypeException, MissingSampleIdException {

user-interface/src/main/java/life/qbic/datamanager/templates/measurement/ProteomicsMeasurementRegisterTemplate.java

@@ -62,7 +62,7 @@ private static void setAutoWidth(Sheet sheet) {
   @Override
   public byte[] getContent() {
     try (Workbook workbook = new XSSFWorkbook();
-        ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream();) {
+        ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
 
       CellStyle readOnlyHeaderStyle = XLSXTemplateHelper.createReadOnlyHeaderCellStyle(workbook);
       CellStyle boldStyle = createBoldCellStyle(workbook);