update testing infra

.github/workflows/release_and_publish.yml

@@ -15,7 +15,7 @@ jobs:
         uses: actions/checkout@v3
 
       - name: Set up python
-        uses: actions/setup-python@v3
+        uses: actions/setup-python@v4
         with:
           python-version: "3.x"
 

.github/workflows/unittests.yml

@@ -1,4 +1,5 @@
 name: Continuous Integration
+
 on:
   push:
     branches:
@@ -15,14 +16,7 @@ on:
         default: test
         required: false
 jobs:
-  linting:
-     runs-on: ubuntu-latest
-     steps:
-       - uses: actions/checkout@v3
-       - uses: actions/setup-python@v4
-       - uses: pre-commit/[email protected]
   testing:
-    needs: linting
     env:
       RUN_TEST: pytest splot -v -r a --cov splot --cov-config .coveragerc --cov-report xml --color yes --cov-append --cov-report term-missing
     name: ${{ matrix.os }}, ${{ matrix.environment-file }}
@@ -33,76 +27,78 @@ jobs:
         os: [ubuntu-latest]
         environment-file:
           - ci/38-MIN.yaml
-          - ci/38-BASE.yaml
-          - ci/39-BASE.yaml
-          - ci/310-BASE.yaml
-          - ci/310-DEV.yaml
-          - ci/310-DEV_shapely_dev.yaml
+          - ci/38.yaml
+          - ci/39.yaml
+          - ci/310.yaml
+          - ci/311.yaml
+          - ci/311-DEV.yaml
         include:
-          - environment-file: ci/310-BASE.yaml
+          - environment-file: ci/311.yaml
             os: macos-latest
-          - environment-file: ci/310-BASE.yaml
+          - environment-file: ci/311.yaml
             os: windows-latest
       fail-fast: false
 
+    defaults:
+       run:
+         shell: bash -l {0}
+
     steps:
       - name: checkout repo
         uses: actions/checkout@v3
 
       - name: setup micromamba
-        uses: mamba-org/provision-with-micromamba@main
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ${{ matrix.environment-file }}
           micromamba-version: 'latest'
-          channel-priority: 'flexible'
 
       - name: install bleeding edge PySAL submodules (only Ubuntu / Python 3.10)
-        shell: bash -l {0}
         run: |
-          pip install git+https://github.com/pysal/libpysal.git@master
+          pip install git+https://github.com/pysal/libpysal.git@main
           pip install git+https://github.com/pysal/mapclassify.git@main
           pip install git+https://github.com/pysal/esda.git@main
           pip install git+https://github.com/pysal/spreg.git@main
           pip install git+https://github.com/pysal/giddy.git@main
         if: matrix.os == 'ubuntu-latest' && contains(matrix.environment-file, 'DEV')
 
       - name: install libpysal example datasets
-        shell: bash -l {0}
-        run: python -c 'import libpysal; libpysal.examples.load_example("Guerry"); libpysal.examples.load_example("Rio Grande do Sul")'
+        run: |
+          python -c 'import libpysal; libpysal.examples.load_example("Guerry"); libpysal.examples.load_example("Rio Grande do Sul")'
 
       - name: install and import splot
-        shell: bash -l {0}
         run: |
           python -m pip install --no-deps -e .
           python -c 'import splot'
 
       - name: copy matplotlibrc
-        shell: bash -l {0}
         run: cp utils/matplotlibrc .
 
       - name: environment info
-        shell: bash -l {0}
         run: |
           micromamba info
           micromamba list
        
       - name: spatial versions
-        shell: bash -l {0}
         run: 'python -c "import geopandas; geopandas.show_versions();"'
 
-      - name: run tests - bash
-        shell: bash -l {0}
-        run: ${{ env.RUN_TEST }}
-        if: matrix.os != 'windows-latest'
-
-      - name: run tests - powershell
-        shell: powershell
-        run: ${{ env.RUN_TEST }}
-        if: matrix.os == 'windows-latest'
-
+      - name: run tests
+        run: |
+          pytest splot -v -r a --cov splot --cov-config .coveragerc --cov-report xml --color yes --cov-append --cov-report term-missing
+  
       - name: codecov
-        uses: codecov/codecov-action@v2
+        uses: codecov/codecov-action@v3
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
           file: ./coverage.xml
           name: splot-codecov
+
+      - name: Generate and publish the report
+        if: |
+          failure()
+          && steps.status.outcome == 'failure'
+          && github.event_name == 'schedule'
+          && github.repository_owner == 'pysal'
+        uses: xarray-contrib/issue-from-pytest-log@v1
+        with:
+          log-path: pytest-log.jsonl

README.md

@@ -1,6 +1,6 @@
 # splot
 
-[![unittests](https://github.com/pysal/splot/workflows/.github/workflows/unittests.yml/badge.svg)](https://github.com/pysal/splot/actions?query=workflow%3A.github%2Fworkflows%2Funittests.yml)
+[![Continuous Integration](https://github.com/pysal/splot/actions/workflows/unittests.yml/badge.svg)](https://github.com/pysal/splot/actions/workflows/unittests.yml)
 [![codecov](https://codecov.io/gh/pysal/splot/branch/main/graph/badge.svg)](https://codecov.io/gh/pysal/splot)
 [![Documentation Status](https://readthedocs.org/projects/splot/badge/?version=latest)](https://splot.readthedocs.io/en/latest/?badge=latest)
 [![PyPI version](https://badge.fury.io/py/splot.svg)](https://badge.fury.io/py/splot)

ci/310-DEV.yaml → ci/311-DEV.yaml

@@ -2,7 +2,7 @@ name: test
 channels:
   - conda-forge
 dependencies:
-  - python=3.10
+  - python=3.11
   # testing
   - codecov
   - pytest

ci/310-DEV_shapely_dev.yaml → ci/311.yaml

@@ -1,23 +1,26 @@
 name: test
 channels:
   - conda-forge
-  - conda-forge/label/shapely_dev
 dependencies:
-  - python=3.10
+  - python=3.11
   # testing
   - codecov
   - pytest
   - pytest-cov
   # required
   - bokeh
-  - geopandas>=0.12.0
+  - esda
+  - geopandas
+  - giddy
   - ipywidgets
+  - libpysal
+  - mapclassify
   - matplotlib
   - numpy
   - packaging
   - pip
-  - seaborn
-  - shapely>=2.0b1
+  - seaborn>=0.11.0
+  - spreg
   # formatting
   - black
   - flake8