Snakemake module #1
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name: CI | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
branches: | |
- main | |
schedule: | |
- cron: "0 5 * * TUE" | |
env: | |
CACHE_NUMBER: 2 # Change this value to manually reset the environment cache | |
jobs: | |
build: | |
strategy: | |
fail-fast: false | |
max-parallel: 3 | |
matrix: | |
os: | |
- ubuntu-latest | |
- macos-latest | |
# - windows-latest | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Setup micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
micromamba-version: latest | |
environment-file: pypsa-earth/envs/environment.yaml | |
log-level: debug | |
init-shell: bash | |
cache-environment: true | |
cache-downloads: true | |
- name: Set cache dates | |
run: | | |
echo "WEEK=$(date +'%Y%U')" >> $GITHUB_ENV | |
- name: Cache data and cutouts folders | |
uses: actions/cache@v3 | |
with: | |
path: | | |
data | |
cutouts | |
key: data-cutouts-${{ env.WEEK }}-${{ env.CACHE_NUMBER }} | |
- name: Conda list | |
run: conda list | |
- name: Run Test | |
run: make test |