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Bump cython, fixes for tests, and fixes for deprecation warnings #192

Bump cython, fixes for tests, and fixes for deprecation warnings

Bump cython, fixes for tests, and fixes for deprecation warnings #192

Workflow file for this run

name: ZOLTAN/MPI Tests
on:
pull_request:
schedule:
# Run test at 0400 UTC on day 1 of every month to create auto-generated
# code afresh and cache it.
- cron: '0 4 1 * *' # Ref https://crontab.guru/#0_4_1_*_*
jobs:
tests:
strategy:
matrix:
os: [ubuntu-latest]
python-version: [3.11]
env:
USE_TRILINOS: 1
ZOLTAN_INCLUDE: /usr/include/trilinos
ZOLTAN_LIBRARY: /usr/lib/x86_64-linux-gnu
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- name: Install Linux packages ZOLTAN support
run: |
sudo apt-get update
sudo apt-get install -y openmpi-bin libopenmpi-dev libtrilinos-zoltan-dev
- name: Set up Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}
channels: conda-forge
- name: Install dependencies
run: |
conda info
python -m pip install --upgrade pip setuptools wheel
python -m pip install https://github.com/pypr/cyarray/zipball/master
python -m pip install https://github.com/pypr/pyzoltan/zipball/master
python -m pip install https://github.com/pypr/compyle/zipball/master
python -m pip install -r requirements.txt
python -m pip install -r requirements-test.txt
python setup.py develop
pip list
# Cache auto-generated code. Cache key changes every month.
# Thanks https://stackoverflow.com/a/60942437
- name: Get month to use as cache key.
id: month
run: echo "month==$(date +'%m')" >> $GITHUB_OUTPUT
- name: Deal with auto-generated code cache
uses: actions/cache@v4
with:
path: |
~/.pysph
~/.compyle
key: zoltan-${{ steps.month.outputs.month }}
- name: Run tests
run: |
python -m pytest -v -m 'slow or parallel'