michaelis_menten transformation as pt.TensorVariable
#244
Workflow file for this run
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| name: Test | |
| on: | |
| pull_request: | |
| branches: [main] | |
| paths: '**.py' | |
| push: | |
| branches: [main] | |
| paths: '**.py' | |
| env: | |
| # The lower bound from the pyproject.toml file | |
| OLDEST_PYMC_VERSION: "$(grep -E 'pymc *>' pyproject.toml | sed -n 's/.*>=\\([0-9]*\\.[0-9]*\\.[0-9]*\\).*/\\1/p')" | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| config: [ {python-version: "3.10", oldest-pymc: false}, {python-version: "3.12", oldest-pymc: true}] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.config.python-version }} | |
| - name: Install oldest version of PyMC | |
| if: ${{ matrix.config.oldest-pymc }} | |
| run: pip install pymc==${{ env.OLDEST_PYMC_VERSION }} | |
| - name: Run tests | |
| run: | | |
| sudo apt-get install graphviz | |
| pip install -e .[test] | |
| pytest --cov-report=xml --no-cov-on-fail --durations=50 | |
| - name: Check oldest version of PyMC | |
| if: ${{ matrix.config.oldest-pymc }} | |
| run: python -c "import pymc; assert pymc.__version__ == '${{ env.OLDEST_PYMC_VERSION }}'" | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # use token for more robust uploads | |
| name: ${{ matrix.config.python-version }} | |
| fail_ci_if_error: false | |
| test_slow: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.10" | |
| - name: Run tests | |
| run: | | |
| pip install -e .[test] | |
| pytest --only-slow --cov-report=xml --no-cov-on-fail --durations=50 | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # use token for more robust uploads | |
| name: "test_slow" | |
| fail_ci_if_error: false | |
| all: | |
| if: ${{ always() }} | |
| runs-on: ubuntu-latest | |
| name: All checks | |
| needs: [ test, test_slow ] | |
| steps: | |
| - name: Confirm checks passed | |
| if: ${{ (needs.test.result != 'success' || needs.test_slow.result != 'success') }} | |
| run: exit 1 |