Update dependencies, Python 3.12 compatibility and CI workflow

- Update python dependencies
- Add compatibility with Python 3.12
- Modify CI workflow to address doc building issues
- Change time until an issue becomes inactive

Signed-off-by: Patrick Bloebaum <[email protected]>

.github/workflows/advanced-on-demand.yml

@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.8, 3.9, "3.10", "3.11"]
+        python-version: [3.8, 3.9, "3.10", "3.11", "3.12"]
         poetry-version: [1.5.1]
         test-group: [1, 2, 3, 4]
 
@@ -54,6 +54,12 @@ jobs:
         with:
           poetry-version: ${{ matrix.poetry-version }}
 
+      - name: Install LLVM and Clang
+        uses: KyleMayes/install-llvm-action@v2
+        with:
+          version: "14.0"
+          directory: ${{ runner.temp }}/llvm
+
       - name: Install graphviz
         run: |
           sudo apt install graphviz libgraphviz-dev graphviz-dev pkg-config

.github/workflows/ci-install.yml

@@ -26,7 +26,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.8, 3.9, "3.10", "3.11"]
+        python-version: [3.8, 3.9, "3.10", "3.11", "3.12"]
 
     steps:
     - uses: actions/checkout@v4
@@ -36,6 +36,12 @@ jobs:
       with:
         python-version: ${{ matrix.python-version }}
 
+    - name: Install LLVM and Clang
+      uses: KyleMayes/install-llvm-action@v2
+      with:
+        version: "14.0"
+        directory: ${{ runner.temp }}/llvm
+
     - name: Install graphviz
       run: |
         sudo apt install graphviz libgraphviz-dev graphviz-dev pkg-config

.github/workflows/ci.yml

@@ -27,7 +27,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.8, 3.9, "3.10", "3.11"]
+        python-version: [3.8, 3.9, "3.10", "3.11", "3.12"]
         poetry-version: [1.5.1]
         test-group: [1, 2, 3, 4, 5, 6]
 
@@ -44,6 +44,12 @@ jobs:
       with:
         poetry-version: ${{ matrix.poetry-version }}
 
+    - name: Install LLVM and Clang
+      uses: KyleMayes/[email protected]
+      with:
+        version: "14.0"
+        directory: ${{ runner.temp }}/llvm
+
     - name: Install graphviz
       run: |
         sudo apt install graphviz libgraphviz-dev graphviz-dev pkg-config

.github/workflows/close-inactive-issues.yml

@@ -12,11 +12,11 @@ jobs:
     steps:
       - uses: actions/stale@v9
         with:
-          days-before-issue-stale: 14
-          days-before-issue-close: 7
+          days-before-issue-stale: 30
+          days-before-issue-close: 14
           stale-issue-label: "stale"
-          stale-issue-message: "This issue is stale because it has been open for 14 days with no activity."
-          close-issue-message: "This issue was closed because it has been inactive for 7 days since being marked as stale."
+          stale-issue-message: "This issue is stale because it has been open for 30 days with no activity."
+          close-issue-message: "This issue was closed because it has been inactive for 14 days since being marked as stale."
           # in case of issue, only process issues with any of the following labels:
           any-of-issue-labels: "question,help wanted,waiting for author"
 

.github/workflows/docs-ci.yml

@@ -12,13 +12,11 @@ on:
 
 jobs:
   docs:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-24.04
     container:
       image: "ghcr.io/${{ github.repository_owner }}/dowhy-docs-generation:latest"
     steps:
       - uses: actions/checkout@v4
-        with:
-          fetch-depth: 0
 
       - name: Install Python Dependencies
         run: poetry install -E plotting -E pydot -E pygraphviz -E econml --with docs
@@ -27,3 +25,9 @@ jobs:
 
       - name: Build
         run: ./docs/generate_docs.sh
+
+      - name: Free up space
+        run: |
+          pip freeze | xargs pip uninstall -y
+          rm -rf ~/.cache/pip
+          df -h

.github/workflows/docs.yml

@@ -16,13 +16,11 @@ on:
 
 jobs:
   docs:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-24.04
     container:
       image: "ghcr.io/${{ github.repository_owner }}/dowhy-docs-generation:latest"
     steps:
       - uses: actions/checkout@v4
-        with:
-          fetch-depth: 0
 
       - name: Install Python Dependencies
         run: poetry install -E plotting -E pydot -E pygraphviz -E econml --with docs
@@ -32,6 +30,12 @@ jobs:
       - name: Build
         run: ./docs/generate_docs.sh
 
+      - name: Free up space
+        run: |
+          pip freeze | xargs pip uninstall -y
+          rm -rf ~/.cache/pip
+          df -h
+
       - name: Commit and push to gh-pages branch
         uses: peaceiris/actions-gh-pages@v4
         with:

.github/workflows/nightly-tests.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.8, 3.9, "3.10", "3.11"]
+        python-version: [3.8, 3.9, "3.10", "3.11", "3.12"]
         poetry-version: [1.5.1]
 
     steps:
@@ -27,6 +27,12 @@ jobs:
         with:
           poetry-version: ${{ matrix.poetry-version }}
 
+      - name: Install LLVM and Clang
+        uses: KyleMayes/install-llvm-action@v2
+        with:
+          version: "14.0"
+          directory: ${{ runner.temp }}/llvm
+
       - name: Install graphviz
         run: |
           sudo apt install graphviz libgraphviz-dev graphviz-dev pkg-config

dowhy/causal_estimators/econml.py

@@ -5,7 +5,6 @@
 
 import numpy as np
 import pandas as pd
-from numpy.distutils.misc_util import is_sequence
 
 from dowhy.causal_estimator import CausalEstimate, CausalEstimator
 from dowhy.causal_identifier import IdentifiedEstimand
@@ -295,7 +294,6 @@ def shap_values(self, df: pd.DataFrame, *args, **kwargs):
     def apply_multitreatment(self, df: pd.DataFrame, fun: Callable, *args, **kwargs):
         ests = []
         assert not isinstance(self._treatment_value, str)
-        assert is_sequence(self._treatment_value)
 
         if df is None:
             filtered_df = None