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daurer committed Jun 7, 2024
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5 changes: 3 additions & 2 deletions notebooks/experimental_xray_data/01_fixing_data_issues.ipynb
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"\n",
"```bash\n",
"RuntimeError: Arrays larger than 50M not supported. You requested 87706.44M pixels.\n",
"```"
"```\n",
"if they have not been provide correctly. "
]
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{
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"id": "6baa4d07-f7cc-4324-b38d-71471c56f8b1",
"metadata": {},
"source": [
"if they have not been provide correctly. Another common issue is that we often don't know exactly the coordinate system of the detector and the scanning stage that was used during data collection, and even if we know it might not match the default coordinate system used in PtyPy. Luckily, there are only a few (8 to be precise) possible configurations and the PtyScan base class has a parameter called [orientation](https://ptycho.github.io/ptypy/rst/parameters.html#scandata.PtyScan.orientation) that makes it very simple to do a brute-force search for the correct setup. \n",
"Another common issue is that we often don't know exactly the coordinate system of the detector and the scanning stage that was used during data collection, and even if we know it might not match the default coordinate system used in PtyPy. Luckily, there are only a few (8 to be precise) possible configurations and the PtyScan base class has a parameter called [orientation](https://ptycho.github.io/ptypy/rst/parameters.html#scandata.PtyScan.orientation) that makes it very simple to do a brute-force search for the correct setup. \n",
"\n",
"Based on the small I08-1 data set that was used in the tutorial on [The HDF5 Loader](./6_the_hdf5_loader.ipynb) we have a created a new file named \"dls_i08_nanogold_issue.h5\" for which the coordinate system has been modified sligthly. The task for this tutorial is to figure out the correct ```orientation``` based on the data that has been provided. As a starting point, we set it to zero.\n",
"\n",
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