Toy example from stripped down NBIC workflow demonstrating the usage of Provena for registering notebook based provenance.
Install system dependencies using apt-get (graphviz and libs) (linux based system)
./dependencies.sh
Install python venv
python -m venv .venv
source .venv/bin/activate
pip install -r requirements.txt
Run the hourly_FFDI.ipynb notebook.
The workflow_config.py file contains the Pydantic model which the specified workflow file must satisfy.
You can run this file (using the main method) to generate a template file in the configs directory.
There is an example workflow file provided which is currently used in the notebook.